| Insights from 20 years of bacterial genome sequencing M Land, L Hauser, SR Jun, I Nookaew, MR Leuze, TH Ahn, T Karpinets, ... Functional & integrative genomics 15, 141-161, 2015 | 864 | 2015 |
| Sigma: strain-level inference of genomes from metagenomic analysis for biosurveillance TH Ahn, J Chai, C Pan Bioinformatics 31 (2), 170-177, 2015 | 108 | 2015 |
| Omega: an Overlap-graph de novo Assembler for Metagenomics B Haider, TH Ahn, B Bushnell, J Chai, A Copeland, C Pan Bioinformatics 30 (19), 2717-2722, 2014 | 107 | 2014 |
| Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community Z Li, Y Wang, Q Yao, NB Justice, TH Ahn, D Xu, RL Hettich, JF Banfield, ... Nature communications 5 (1), 4405, 2014 | 68 | 2014 |
| Single-cell transcriptional analyses identify lineage-specific epithelial responses to inflammation and metaplastic development in the gastric corpus KA Bockerstett, SA Lewis, CN Noto, EL Ford, JB Saenz, NM Jackson, ... Gastroenterology 159 (6), 2116-2129. e4, 2020 | 62 | 2020 |
| Single-cell transcriptional analyses of spasmolytic polypeptide-expressing metaplasia arising from acute drug injury and chronic inflammation in the stomach KA Bockerstett, SA Lewis, KJ Wolf, CN Noto, NM Jackson, EL Ford, ... Gut 69 (6), 1027-1038, 2020 | 58 | 2020 |
| Massive metagenomic data analysis using abundance-based machine learning ZN Harris, E Dhungel, M Mosior, TH Ahn Biology direct 14, 1-13, 2019 | 40 | 2019 |
| Sipros/ProRata: a versatile informatics system for quantitative community proteomics Y Wang, TH Ahn, Z Li, C Pan Bioinformatics 29 (16), 2064-2065, 2013 | 38 | 2013 |
| YeasTSS: an integrative web database of yeast transcription start sites J McMillan, Z Lu, JS Rodriguez, TH Ahn, Z Lin Database 2019, baz048, 2019 | 37 | 2019 |
| Identifying and tracking low-frequency virus-specific TCR clonotypes using high-throughput sequencing K Wolf, T Hether, P Gilchuk, A Kumar, A Rajeh, C Schiebout, J Maybruck, ... Cell reports 25 (9), 2369-2378. e4, 2018 | 31 | 2018 |
| Functional phylogenomics analysis of bacteria and archaea using consistent genome annotation with UniFam J Chai, G Kora, TH Ahn, D Hyatt, C Pan BMC evolutionary biology 14, 1-13, 2014 | 22 | 2014 |
| Stochastic exit from mitosis in budding yeast: model predictions and experimental observations DA Ball, TH Ahn, P Wang, KC Chen, Y Cao, JJ Tyson, J Peccoud, ... Cell cycle 10 (6), 999-1009, 2011 | 22 | 2011 |
| LONGO: an R package for interactive gene length dependent analysis for neuronal identity MJ McCoy, AJ Paul, MB Victor, M Richner, HW Gabel, H Gong, AS Yoo, ... Bioinformatics 34 (13), i422-i428, 2018 | 19 | 2018 |
| Implicit simulation methods for stochastic chemical kinetics TH Ahn, A Sandu, X Han Journal of Applied Analysis and Computation 6 (3), 420-452, 2015 | 19 | 2015 |
| A framework to analyze the performance of load balancing schemes for ensembles of stochastic simulations TH Ahn, A Sandu, LT Watson, CA Shaffer, Y Cao, WT Baumann International Journal of Parallel Programming 43, 597-630, 2015 | 16 | 2015 |
| Evaluating Performance Optimizations of Large-scale Genomic Sequence Search Applications using SST/macro. TH Ahn, D Dechev, H Lin, H Adalsteinsson, CL Janssen SIMULTECH, 65-73, 2011 | 16 | 2011 |
| DNA based methods in intelligence-moving towards metagenomics G Mason-Buck, A Graf, E Elhaik, J Robinson, E Pospiech, M Oliveira, ... Preprints, 2020 | 12 | 2020 |
| Stochastic Simulation Algorithms for Chemical Reactions. TH Ahn, Y Cao, LT Watson BIOCOMP, 431-436, 2008 | 11 | 2008 |
| MegaR: an interactive R package for rapid sample classification and phenotype prediction using metagenome profiles and machine learning E Dhungel, Y Mreyoud, HJ Gwak, A Rajeh, M Rho, TH Ahn BMC bioinformatics 22, 1-12, 2021 | 10 | 2021 |
| TSSr: an R package for comprehensive analyses of TSS sequencing data Z Lu, K Berry, Z Hu, Y Zhan, TH Ahn, Z Lin NAR Genomics and Bioinformatics 3 (4), lqab108, 2021 | 8 | 2021 |
