| TriTrypDB: a functional genomic resource for the Trypanosomatidae M Aslett, C Aurrecoechea, M Berriman, J Brestelli, BP Brunk, M Carrington, ... Nucleic acids research 38 (suppl_1), D457-D462, 2010 | 1026 | 2010 |
| Comparative genomic analysis of three Leishmania species that cause diverse human disease CS Peacock, K Seeger, D Harris, L Murphy, JC Ruiz, MA Quail, N Peters, ... Nature genetics 39 (7), 839-847, 2007 | 954 | 2007 |
| Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania MB Rogers, JD Hilley, NJ Dickens, J Wilkes, PA Bates, DP Depledge, ... Genome research 21 (12), 2129-2142, 2011 | 516 | 2011 |
| Rapid whole-genome sequencing of Mycobacterium tuberculosis isolates directly from clinical samples AC Brown, JM Bryant, K Einer-Jensen, J Holdstock, DT Houniet, ... Journal of clinical microbiology 53 (7), 2230-2237, 2015 | 306 | 2015 |
| Specific capture and whole-genome sequencing of viruses from clinical samples DP Depledge, AL Palser, SJ Watson, IYC Lai, ER Gray, P Grant, ... PloS one 6 (11), e27805, 2011 | 236 | 2011 |
| Specific capture and whole-genome sequencing of viruses from clinical samples DP Depledge, AL Palser, SJ Watson, IYC Lai, ER Gray, P Grant, ... PloS one 6 (11), e27805, 2011 | 236 | 2011 |
| RNA m6 A modification enzymes shape innate responses to DNA by regulating interferon β RM Rubio, DP Depledge, C Bianco, L Thompson, I Mohr Genes & development 32 (23-24), 1472-1484, 2018 | 206 | 2018 |
| Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen DP Depledge, KP Srinivas, T Sadaoka, D Bready, Y Mori, ... Nature communications 10 (1), 754, 2019 | 201 | 2019 |
| Viral population analysis and minority-variant detection using short read next-generation sequencing SJ Watson, MRA Welkers, DP Depledge, E Coulter, JM Breuer, ... Philosophical Transactions of the Royal Society B: Biological Sciences 368 …, 2013 | 201 | 2013 |
| Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination J Cudini, S Roy, CJ Houldcroft, JM Bryant, DP Depledge, H Tutill, P Veys, ... Proceedings of the National Academy of Sciences 116 (12), 5693-5698, 2019 | 147 | 2019 |
| Direct RNA sequencing reveals m6A modifications on adenovirus RNA are necessary for efficient splicing AM Price, KE Hayer, ABR McIntyre, NS Gokhale, JS Abebe, ... Nature communications 11 (1), 6016, 2020 | 140 | 2020 |
| Comparative Expression Profiling of Leishmania: Modulation in Gene Expression between Species and in Different Host Genetic Backgrounds DP Depledge, KJ Evans, AC Ivens, N Aziz, A Maroof, PM Kaye, DF Smith PLoS neglected tropical diseases 3 (7), e476, 2009 | 122 | 2009 |
| ICTV Virus Taxonomy Profile: Herpesviridae 2021 D Gatherer, DP Depledge, CA Hartley, ML Szpara, PK Vaz, M Benkő, ... Journal of General Virology 102 (10), 001673, 2021 | 120 | 2021 |
| Deep sequencing of viral genomes provides insight into the evolution and pathogenesis of varicella zoster virus and its vaccine in humans DP Depledge, S Kundu, NJ Jensen, ER Gray, M Jones, S Steinberg, ... Molecular biology and evolution 31 (2), 397-409, 2014 | 111 | 2014 |
| Next-generation whole genome sequencing identifies the direction of norovirus transmission in linked patients S Kundu, J Lockwood, DP Depledge, Y Chaudhry, A Aston, K Rao, ... Clinical infectious diseases 57 (3), 407-414, 2013 | 102 | 2013 |
| Whole-genome enrichment and sequencing of Chlamydia trachomatisdirectly from clinical samples MT Christiansen, AC Brown, S Kundu, HJ Tutill, R Williams, JR Brown, ... BMC infectious diseases 14, 1-11, 2014 | 91 | 2014 |
| A spliced latency-associated VZV transcript maps antisense to the viral transactivator gene 61 DP Depledge, WJD Ouwendijk, T Sadaoka, SE Braspenning, Y Mori, ... Nature communications 9 (1), 1167, 2018 | 86 | 2018 |
| Targeting the m6A RNA modification pathway blocks SARS-CoV-2 and HCoV-OC43 replication HM Burgess, DP Depledge, L Thompson, KP Srinivas, RC Grande, ... Genes & development 35 (13-14), 1005-1019, 2021 | 85 | 2021 |
| Islands of linkage in an ocean of pervasive recombination reveals two-speed evolution of human cytomegalovirus genomes F Lassalle, DP Depledge, MB Reeves, AC Brown, MT Christiansen, ... Virus evolution 2 (1), vew017, 2016 | 81 | 2016 |
| Recombination of globally circulating varicella-zoster virus P Norberg, DP Depledge, S Kundu, C Atkinson, J Brown, T Haque, ... Journal of virology 89 (14), 7133-7146, 2015 | 81 | 2015 |
