| The joint graphical lasso for inverse covariance estimation across multiple classes P Danaher, P Wang, DM Witten Journal of the Royal Statistical Society Series B: Statistical Methodology …, 2014 | 1037 | 2014 |
| Multiplex digital spatial profiling of proteins and RNA in fixed tissue CR Merritt, GT Ong, SE Church, K Barker, P Danaher, G Geiss, M Hoang, ... Nature biotechnology 38 (5), 586-599, 2020 | 781 | 2020 |
| Gene expression markers of tumor infiltrating leukocytes P Danaher, S Warren, L Dennis, L D’Amico, A White, ML Disis, MA Geller, ... Journal for immunotherapy of cancer 5, 1-15, 2017 | 703 | 2017 |
| Pan-cancer adaptive immune resistance as defined by the Tumor Inflammation Signature (TIS): results from The Cancer Genome Atlas (TCGA) P Danaher, S Warren, R Lu, J Samayoa, A Sullivan, I Pekker, B Wallden, ... Journal for immunotherapy of cancer 6, 1-17, 2018 | 392 | 2018 |
| High-plex imaging of RNA and proteins at subcellular resolution in fixed tissue by spatial molecular imaging S He, R Bhatt, C Brown, EA Brown, DL Buhr, K Chantranuvatana, ... Nature Biotechnology 40 (12), 1794-1806, 2022 | 326 | 2022 |
| Temporal and spatial heterogeneity of host response to SARS-CoV-2 pulmonary infection N Desai, A Neyaz, A Szabolcs, AR Shih, JH Chen, V Thapar, LT Nieman, ... Nature communications 11 (1), 6319, 2020 | 236 | 2020 |
| Advances in mixed cell deconvolution enable quantification of cell types in spatial transcriptomic data P Danaher, Y Kim, B Nelson, M Griswold, Z Yang, E Piazza, JM Beechem Nature communications 13 (1), 385, 2022 | 177 | 2022 |
| Flt3 ligand augments immune responses to anti-DEC-205-NY-ESO-1 vaccine through expansion of dendritic cell subsets N Bhardwaj, PA Friedlander, AC Pavlick, MS Ernstoff, BR Gastman, ... Nature cancer 1 (12), 1204-1217, 2020 | 91 | 2020 |
| The immune microenvironment in hormone Receptor–Positive breast cancer before and after preoperative chemotherapy AG Waks, DG Stover, JL Guerriero, D Dillon, WT Barry, E Gjini, C Hartl, ... Clinical Cancer Research 25 (15), 4644-4655, 2019 | 90 | 2019 |
| Modeling bi-modality improves characterization of cell cycle on gene expression in single cells A McDavid, L Dennis, P Danaher, G Finak, M Krouse, A Wang, P Webster, ... PLoS computational biology 10 (7), e1003696, 2014 | 81 | 2014 |
| High-plex multiomic analysis in FFPE tissue at single-cellular and subcellular resolution by spatial molecular imaging S He, R Bhatt, B Birditt, C Brown, E Brown, K Chantranuvatana, ... bioRxiv, 2021.11. 03.467020, 2021 | 75 | 2021 |
| Immune profiling of pre-and post-treatment breast cancer tissues from the SWOG S0800 neoadjuvant trial X Li, S Warren, V Pelekanou, V Wali, A Cesano, M Liu, P Danaher, ... Journal for immunotherapy of cancer 7, 1-9, 2019 | 69 | 2019 |
| Preoperative risk score for the prediction of mortality after repair of ruptured abdominal aortic aneurysms BT Garland, PJ Danaher, S Desikan, NT Tran, E Quiroga, N Singh, ... Journal of vascular surgery 68 (4), 991-997, 2018 | 58 | 2018 |
| Engineering domain fusion chimeras from I-OnuI family LAGLIDADG homing endonucleases S Baxter, AR Lambert, R Kuhar, J Jarjour, N Kulshina, F Parmeggiani, ... Nucleic acids research 40 (16), 7985-8000, 2012 | 58 | 2012 |
| Facile semi-automated forensic body fluid identification by multiplex solution hybridization of NanoString® barcode probes to specific mRNA targets P Danaher, RL White, EK Hanson, J Ballantyne Forensic Science International: Genetics 14, 18-30, 2015 | 50 | 2015 |
| Metabolic adaptation of ovarian tumors in patients treated with an IDO1 inhibitor constrains antitumor immune responses K Odunsi, F Qian, AA Lugade, H Yu, MA Geller, SP Fling, JC Kaiser, ... Science translational medicine 14 (636), eabg8402, 2022 | 41 | 2022 |
| Deep learning in single-cell analysis D Molho, J Ding, W Tang, Z Li, H Wen, Y Wang, J Venegas, W Jin, R Liu, ... ACM Transactions on Intelligent Systems and Technology 15 (3), 1-62, 2024 | 26 | 2024 |
| A gene expression assay for simultaneous measurement of microsatellite instability and anti-tumor immune activity P Danaher, S Warren, SF Ong, N Elliott, A Cesano, S Ferree Journal for immunotherapy of cancer 7, 1-12, 2019 | 25 | 2019 |
| Efficacy and safety of entinostat (ENT) and pembrolizumab (PEMBRO) in patients with melanoma progressing on or after a PD-1/L1 blocking antibody. SS Agarwala, SJ Moschos, ML Johnson, M Opyrchal, D Gabrilovich, ... Journal of Clinical Oncology 36 (15_suppl), 9530-9530, 2018 | 25 | 2018 |
| JGL: Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes P Danaher R package version 2 (1), 2013 | 25 | 2013 |
