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Eric Alm
Eric Alm
Professor of Biological Engineering, MIT
Verified email at mit.edu - Homepage
Title
Cited by
Cited by
Year
Structure, function and diversity of the healthy human microbiome
nature 486 (7402), 207-214, 2012
86692012
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
66682019
A framework for human microbiome research
nature 486 (7402), 215-221, 2012
20172012
Inferring correlation networks from genomic survey data
J Friedman, EJ Alm
Public Library of Science 8 (9), e1002687, 2012
15032012
Ecology drives a global network of gene exchange connecting the human microbiome
CS Smillie, MB Smith, J Friedman, OX Cordero, LA David, EJ Alm
Nature 480 (7376), 241-244, 2011
8172011
Salt-responsive gut commensal modulates TH17 axis and disease
N Wilck, MG Matus, SM Kearney, SW Olesen, K Forslund, ...
Nature 551 (7682), 585-589, 2017
7992017
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
7912018
Host lifestyle affects human microbiota on daily timescales
LA David, AC Materna, J Friedman, MI Campos-Baptista, MC Blackburn, ...
Genome biology 15 (7), 1-15, 2014
7732014
Meta-analysis of gut microbiome studies identifies disease-specific and shared responses
C Duvallet, SM Gibbons, T Gurry, RA Irizarry, EJ Alm
Nature communications 8 (1), 1-10, 2017
6202017
SARS-CoV-2 titers in wastewater are higher than expected from clinically confirmed cases
F Wu, J Zhang, A Xiao, X Gu, WL Lee, F Armas, K Kauffman, W Hanage, ...
Msystems 5 (4), e00614-20, 2020
6122020
Resource partitioning and sympatric differentiation among closely related bacterioplankton
DE Hunt, LA David, D Gevers, SP Preheim, EJ Alm, MF Polz
Science 320 (5879), 1081-1085, 2008
5302008
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
S Weiss, W Van Treuren, C Lozupone, K Faust, J Friedman, Y Deng, ...
The ISME journal 10 (7), 1669-1681, 2016
5292016
Fecal Microbiota Transplant for Relapsing Clostridium difficile Infection Using a Frozen Inoculum From Unrelated Donors: A Randomized, Open-Label, Controlled …
I Youngster, J Sauk, C Pindar, RG Wilson, JL Kaplan, MB Smith, EJ Alm, ...
Clinical infectious diseases 58 (11), 1515-1522, 2014
5172014
Population genomics of early events in the ecological differentiation of bacteria
BJ Shapiro, J Friedman, OX Cordero, SP Preheim, SC Timberlake, ...
science 336 (6077), 48-51, 2012
4842012
MicrobesOnline: an integrated portal for comparative and functional genomics
PS Dehal, MP Joachimiak, MN Price, JT Bates, JK Baumohl, D Chivian, ...
Nucleic acids research 38 (suppl_1), D396-D400, 2010
4802010
Environmental genomics reveals a single-species ecosystem deep within Earth
D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ...
Science 322 (5899), 275-278, 2008
4782008
Critical role of β-hairpin formation in protein G folding
EL McCallister, E Alm, D Baker
Nature structural biology 7 (8), 669-673, 2000
4782000
The bacterial species challenge: making sense of genetic and ecological diversity
C Fraser, EJ Alm, MF Polz, BG Spratt, WP Hanage
science 323 (5915), 741-746, 2009
4762009
Experiment and theory highlight role of native state topology in SH3 folding
DS Riddle, VP Grantcharova, JV Santiago, E Alm, I Ruczinski, D Baker
Nature structural biology 6 (11), 1016-1024, 1999
4671999
Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures
E Alm, D Baker
Proceedings of the National Academy of Sciences 96 (20), 11305-11310, 1999
4541999
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Articles 1–20