J. Christian J. Ray
J. Christian J. Ray
بريد إلكتروني تم التحقق منه على ku.edu - الصفحة الرئيسية
عنوان
عدد مرات الاقتباسات
عدد مرات الاقتباسات
السنة
A methodology for performing global uncertainty and sensitivity analysis in systems biology
S Marino, IB Hogue, CJ Ray, DE Kirschner
Journal of theoretical biology 254 (1), 178-196, 2008
13942008
Synergy between individual TNF-dependent functions determines granuloma performance for controlling Mycobacterium tuberculosis infection
JCJ Ray, JAL Flynn, DE Kirschner
The Journal of Immunology 182 (6), 3706-3717, 2009
1432009
Bistable responses in bacterial genetic networks: designs and dynamical consequences
A Tiwari, JCJ Ray, J Narula, OA Igoshin
Mathematical biosciences 231 (1), 76-89, 2011
652011
Stress‐response balance drives the evolution of a network module and its host genome
C González, JCJ Ray, M Manhart, RM Adams, D Nevozhay, AV Morozov, ...
Molecular systems biology 11 (8), 827, 2015
642015
Adaptable functionality of transcriptional feedback in bacterial two-component systems
JCJ Ray, OA Igoshin
PLoS Comput Biol 6 (2), e1000676-e1000676, 2010
592010
Adaptive evolution of the lactose utilization network in experimentally evolved populations of Escherichia coli
S Quan, JCJ Ray, Z Kwota, T Duong, G Balázsi, TF Cooper, RD Monds
PLoS Genet 8 (1), e1002444, 2012
542012
Non-transcriptional regulatory processes shape transcriptional network dynamics
JCJ Ray, JJ Tabor, OA Igoshin
Nature Reviews Microbiology 9 (11), 817-828, 2011
512011
The timing of TNF and IFN-γ signaling affects macrophage activation strategies during Mycobacterium tuberculosis infection
JCJ Ray, J Wang, J Chan, DE Kirschner
Journal of theoretical biology 252 (1), 24-38, 2008
452008
Interplay of gene expression noise and ultrasensitive dynamics affects bacterial operon organization
JCJ Ray, OA Igoshin
PLoS Comput Biol 8 (8), e1002672, 2012
212012
Cellular growth arrest and persistence from enzyme saturation
JCJ Ray, ML Wickersheim, AP Jalihal, YO Adeshina, TF Cooper, ...
PLoS Computational Biology 12 (3), e1004825, 2016
202016
The effect of phospholipids and mucin on bacterial internalization in an enterocyte cell culture model
N Usui, C Ray, H Okuyama, RA Drongowski, AG Coran, CM Harmon
Ped Surg Int 15, 150-154, 1999
181999
Requirement for multiple activation signals by anti-inflammatory feedback in macrophages
JCJ Ray, DE Kirschner
Journal of theoretical biology 241 (2), 276-294, 2006
132006
Amino acid positions subject to multiple co‐evolutionary constraints can be robustly identified by their eigenvector network centrality scores
DJ Parente, JCJ Ray, L Swint‐Kruse
Proteins: Structure, Function, and Bioinformatics, 2015
122015
Survival of phenotypic information during cellular growth transitions
JCJ Ray
ACS Synthetic Biology 5 (8), 810-816, 2016
42016
Diversity in lac Operon Regulation among Diverse Escherichia coli Isolates Depends on the Broader Genetic Background but Is Not Explained by Genetic Relatedness
KN Phillips, S Widmann, HY Lai, J Nguyen, JCJ Ray, G Balázsi, ...
Mbio 10 (6), 2019
32019
Lineage space and the propensity of bacterial cells to undergo growth transitions
A Bandyopadhyay, H Wang, JCJ Ray
PLoS computational biology 14 (8), e1006380, 2018
32018
A novel metric reveals previously unrecognized distortion in dimensionality reduction of scRNA-Seq data
SM Cooley, T Hamilton, EJ Deeds, JCJ Ray
BioRxiv, 689851, 2019
12019
Tasting the Terroir with Tsr
AR Podgorny, JCJ Ray
Biophysical Journal 118 (2), 279-280, 2020
2020
Computation by natural systems
D Chu, M Prokopenko, JCJ Ray
Interface Focus 8 (6), 20180058, 2018
2018
Intergenerational Cellular Signal Transfer and Erasure
GWC McElfresh, JCJ Ray
The interplay of thermodynamics and computation in natural and artificial …, 2018
2018
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مقالات 1–20