| Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix D Liebschner, PV Afonine, ML Baker, G Bunkóczi, VB Chen, TI Croll, ... Acta Crystallographica Section D: Structural Biology 75 (10), 861-877, 2019 | 3641 | 2019 |
| MolProbity: More and better reference data for improved all‐atom structure validation CJ Williams, JJ Headd, NW Moriarty, MG Prisant, LL Videau, LN Deis, ... Protein Science 27 (1), 293-315, 2018 | 2587 | 2018 |
| The Phenix software for automated determination of macromolecular structures PD Adams, PV Afonine, G Bunkóczi, VB Chen, N Echols, JJ Headd, ... Methods 55 (1), 94-106, 2011 | 808 | 2011 |
| Generating Uniform Incremental Grids on SO(3) Using the Hopf Fibration A Yershova, S Jain, SM Lavalle, JC Mitchell The International journal of robotics research 29 (7), 801-812, 2010 | 218 | 2010 |
| New tools provide a second look at HDV ribozyme structure, dynamics and cleavage GJ Kapral, S Jain, J Noeske, JA Doudna, DC Richardson, JS Richardson Nucleic acids research 42 (20), 12833-12846, 2014 | 47 | 2014 |
| Structure-altering mutations of the SARS-CoV-2 frameshifting RNA element T Schlick, Q Zhu, S Jain, S Yan Biophysical journal 120 (6), 1040-1053, 2021 | 43 | 2021 |
| To Knot or Not to Knot: Multiple Conformations of the SARS-CoV-2 Frameshifting RNA Element T Schlick, Q Zhu, A Dey, S Jain, S Yan, A Larderach J. Am. Chem. Soc 143 (30), 11404–11422, 2021 | 38 | 2021 |
| Computational methods for RNA structure validation and improvement S Jain, DC Richardson, JS Richardson Methods in enzymology 558, 181-212, 2015 | 37 | 2015 |
| F-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment Assembly S Jain, T Schlick Journal of molecular biology 429 (23), 3587-3605, 2017 | 36 | 2017 |
| BWM*: A novel, provable, ensemble-based dynamic programming algorithm for sparse approximations of computational protein design JD Jou, S Jain, IS Georgiev, BR Donald Journal of Computational Biology 23 (6), 413-424, 2016 | 22 | 2016 |
| A pipeline for computational design of novel RNA-like topologies S Jain, A Laederach, SBV Ramos, T Schlick Nucleic acids research 46 (14), 7040-7051, 2018 | 21 | 2018 |
| Length-dependent motions of SARS-CoV-2 frameshifting RNA pseudoknot and alternative conformations suggest avenues for frameshifting suppression S Yan, Q Zhu, S Jain, T Schlick Research Square, 2022 | 19 | 2022 |
| Inverse folding with RNA-As-Graphs produces a large pool of candidate sequences with target topologies S Jain, Y Tao, T Schlick Journal of structural biology 209 (3), 107438, 2020 | 12 | 2020 |
| An extended dual graph library and partitioning algorithm applicable to pseudoknotted RNA structures S Jain, S Saju, L Petingi, T Schlick Methods 162, 74-84, 2019 | 12 | 2019 |
| Dual Graph Partitioning Highlights a Small Group of Pseudoknot-Containing RNA Submotifs S Jain, C Bayrak, L Petingi, T Schlick Genes 9 (8), 371, 2018 | 11 | 2018 |
| RAG-Web: RNA structure prediction/design using RNA-As-Graphs G Meng, M Tariq, S Jain, S Elmetwaly, T Schlick Bioinformatics 36 (2), 647-648, 2020 | 7 | 2020 |
| BWM*: a novel, provable, ensemble-based dynamic programming algorithm for sparse approximations of computational protein design JD Jou, S Jain, I Georgiev, BR Donald International Conference on Research in Computational Molecular Biology, 154-166, 2015 | 7 | 2015 |
| Identification of novel RNA design candidates by clustering the extended RNA-As-Graphs library S Jain, Q Zhu, ASP Paz, T Schlick Biochimica et Biophysica Acta (BBA)-General Subjects 1864 (6), 129534, 2020 | 5 | 2020 |
| A critical analysis of computational protein design with sparse residue interaction graphs S Jain, JD Jou, IS Georgiev, BR Donald PLOS Computational Biology 13 (3), e1005346, 2017 | 2 | 2017 |
| RNA 3D Structure Analysis and Validation, and Design Algorithms for Proteins and RNA S Jain Duke University, 2015 | | 2015 |
David C. RichardsonProfessor of Biochemistry, Duke UniversityVerified email at kinemage.biochem.duke.edu
