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Katharina E Hayer
Katharina E Hayer
Bioinformatics Scientist III, DBHi, Children's Hospital of Philadelphia
Verified email at EMAIL.CHOP.EDU
Title
Cited by
Cited by
Year
CircaDB: a database of mammalian circadian gene expression profiles
A Pizarro, K Hayer, NF Lahens, JB Hogenesch
Nucleic acids research 41 (D1), D1009-D1013, 2012
3422012
Simulation-based comprehensive benchmarking of RNA-seq aligners
G Baruzzo, KE Hayer, EJ Kim, B Di Camillo, GA FitzGerald, GR Grant
Nature methods 14 (2), 135-139, 2017
2902017
Impaired death receptor signaling in leukemia causes antigen-independent resistance by inducing CAR T-cell dysfunction
N Singh, YG Lee, O Shestova, P Ravikumar, KE Hayer, SJ Hong, XM Lu, ...
Cancer discovery 10 (4), 552-567, 2020
2142020
IVT-seq reveals extreme bias in RNA sequencing
NF Lahens, IH Kavakli, R Zhang, K Hayer, MB Black, H Dueck, A Pizarro, ...
Genome biology 15, 1-15, 2014
1872014
Direct RNA sequencing reveals m6A modifications on adenovirus RNA are necessary for efficient splicing
AM Price, KE Hayer, ABR McIntyre, NS Gokhale, JS Abebe, ...
Nature communications 11 (1), 6016, 2020
1352020
DNA double-strand breaks induce H2Ax phosphorylation domains in a contact-dependent manner
PL Collins, C Purman, SI Porter, V Nganga, A Saini, KE Hayer, ...
Nature communications 11 (1), 3158, 2020
1222020
Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data
KE Hayer, A Pizarro, NF Lahens, JB Hogenesch, GR Grant
Bioinformatics 31 (24), 3938-3945, 2015
1132015
Promotion of growth factor signaling as a critical function of β-catenin during HCC progression
E Kim, A Lisby, C Ma, N Lo, U Ehmer, KE Hayer, EE Furth, P Viatour
Nature communications 10 (1), 1909, 2019
952019
A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression
NF Lahens, E Ricciotti, O Smirnova, E Toorens, EJ Kim, G Baruzzo, ...
BMC genomics 18, 1-13, 2017
932017
A genome-wide screen identifies PAPP-AA-mediated IGFR signaling as a novel regulator of habituation learning
MA Wolman, RA Jain, KC Marsden, H Bell, J Skinner, KE Hayer, ...
Neuron 85 (6), 1200-1211, 2015
902015
STAT3–BDNF–TrkB signalling promotes alveolar epithelial regeneration after lung injury
AJ Paris, KE Hayer, JH Oved, DC Avgousti, SA Toulmin, JA Zepp, ...
Nature cell biology 22 (10), 1197-1210, 2020
762020
Retention of CD19 intron 2 contributes to CART-19 resistance in leukemias with subclonal frameshift mutations in CD19
M Asnani, KE Hayer, AS Naqvi, S Zheng, SY Yang, D Oldridge, F Ibrahim, ...
Leukemia 34 (4), 1202-1207, 2020
732020
Cytosine deaminase APOBEC3A sensitizes leukemia cells to inhibition of the DNA replication checkpoint
AM Green, K Budagyan, KE Hayer, MA Reed, MR Savani, GB Wertheim, ...
Cancer research 77 (17), 4579-4588, 2017
552017
Aberrant splicing in B-cell acute lymphoblastic leukemia
KL Black, AS Naqvi, M Asnani, KE Hayer, SY Yang, E Gillespie, ...
Nucleic acids research 46 (21), 11357-11369, 2018
522018
A Cyfip2-Dependent Excitatory Interneuron Pathway Establishes the Innate Startle Threshold
KC Marsden, RA Jain, MA Wolman, FA Echeverry, JC Nelson, KE Hayer, ...
Cell reports 23 (3), 878-887, 2018
482018
Modulation of CD22 protein expression in childhood leukemia by pervasive splicing aberrations: implications for CD22-directed immunotherapies
S Zheng, E Gillespie, AS Naqvi, KE Hayer, Z Ang, M Torres-Diz, ...
Blood cancer discovery 3 (2), 103-115, 2022
292022
DRUMMER—rapid detection of RNA modifications through comparative nanopore sequencing
JS Abebe, AM Price, KE Hayer, I Mohr, MD Weitzman, AC Wilson, ...
Bioinformatics 38 (11), 3113-3115, 2022
282022
Antigen glycosylation regulates efficacy of CAR T cells targeting CD19
A Heard, JH Landmann, AR Hansen, A Papadopolou, YS Hsu, ME Selli, ...
Nature communications 13 (1), 3367, 2022
272022
Transient stabilization, rather than inhibition, of MYC amplifies extrinsic apoptosis and therapeutic responses in refractory B-cell lymphoma
CT Harrington, E Sotillo, A Robert, KE Hayer, AM Bogusz, J Psathas, D Yu, ...
Leukemia 33 (10), 2429-2441, 2019
272019
Adenovirus-mediated ubiquitination alters protein–RNA binding and aids viral RNA processing
C Herrmann, JM Dybas, JC Liddle, AM Price, KE Hayer, R Lauman, ...
Nature Microbiology 5 (10), 1217-1231, 2020
252020
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