| Differential analysis of gene regulation at transcript resolution with RNA-seq C Trapnell, DG Hendrickson, M Sauvageau, L Goff, JL Rinn, L Pachter Nature biotechnology 31 (1), 46-53, 2013 | 3800 | 2013 |
| Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre E Hacisuleyman, LA Goff, C Trapnell, A Williams, J Henao-Mejia, L Sun, ... Nature structural & molecular biology 21 (2), 198-206, 2014 | 677 | 2014 |
| Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA DG Hendrickson, DJ Hogan, HL McCullough, JW Myers, D Herschlag, ... PLoS biology 7 (11), e1000238, 2009 | 539 | 2009 |
| Long noncoding RNAs regulate adipogenesis L Sun, LA Goff, C Trapnell, R Alexander, KA Lo, E Hacisuleyman, ... Proceedings of the National Academy of Sciences 110 (9), 3387-3392, 2013 | 479 | 2013 |
| Programming human pluripotent stem cells into white and brown adipocytes T Ahfeldt, RT Schinzel, YK Lee, D Hendrickson, A Kaplan, DH Lum, ... Nature cell biology 14 (2), 209-219, 2012 | 276 | 2012 |
| Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance DG Hendrickson, DJ Hogan, D Herschlag, JE Ferrell, PO Brown PloS one 3 (5), e2126, 2008 | 245 | 2008 |
| Widespread RNA binding by chromatin-associated proteins D G Hendrickson, DR Kelley, D Tenen, B Bernstein, JL Rinn Genome biology 17, 1-18, 2016 | 218 | 2016 |
| miR-142 regulates the tumorigenicity of human breast cancer stem cells through the canonical WNT signaling pathway T Isobe, S Hisamori, DJ Hogan, M Zabala, DG Hendrickson, P Dalerba, ... Elife 3, e01977, 2014 | 182 | 2014 |
| Solo: doublet identification in single-cell RNA-seq via semi-supervised deep learning NJ Bernstein, NL Fong, I Lam, MA Roy, DG Hendrickson, DR Kelley Cell systems 11 (1), 95-101. e5, 2020 | 132 | 2020 |
| Genome-wide RNA-Seq of human motor neurons implicates selective ER stress activation in spinal muscular atrophy SY Ng, BS Soh, N Rodriguez-Muela, DG Hendrickson, F Price, JL Rinn, ... Cell stem cell 17 (5), 569-584, 2015 | 131 | 2015 |
| Murine single-cell RNA-seq reveals cell-identity-and tissue-specific trajectories of aging JC Kimmel, L Penland, ND Rubinstein, DG Hendrickson, DR Kelley, ... Genome research 29 (12), 2088-2103, 2019 | 123 | 2019 |
| Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions DR Kelley, DG Hendrickson, D Tenen, JL Rinn Genome biology 15, 1-16, 2014 | 98 | 2014 |
| A new experimental platform facilitates assessment of the transcriptional and chromatin landscapes of aging yeast DG Hendrickson, I Soifer, BJ Wranik, G Kim, M Robles, PA Gibney, ... elife 7, e39911, 2018 | 62 | 2018 |
| Learning causal networks using inducible transcription factors and transcriptome‐wide time series SR Hackett, EA Baltz, M Coram, BJ Wranik, G Kim, A Baker, M Fan, ... Molecular systems biology 16 (3), e9174, 2020 | 46 | 2020 |
| Novel insights from a multiomics dissection of the Hayflick limit M Chan, H Yuan, I Soifer, TM Maile, RY Wang, A Ireland, JJ O'Brien, ... Elife 11, e70283, 2022 | 43 | 2022 |
| LINC00520 is induced by Src, STAT3, and PI3K and plays a functional role in breast cancer WS Henry, DG Hendrickson, F Beca, B Glass, M Lindahl-Allen, L He, Z Ji, ... Oncotarget 7 (50), 81981, 2016 | 42 | 2016 |
| rDNA array length is a major determinant of replicative lifespan in budding yeast M Hotz, NH Thayer, DG Hendrickson, EL Schinski, J Xu, DE Gottschling Proceedings of the National Academy of Sciences 119 (15), e2119593119, 2022 | 24 | 2022 |
| Differentiation reveals latent features of aging and an energy barrier in murine myogenesis JC Kimmel, N Yi, M Roy, DG Hendrickson, DR Kelley Cell reports 35 (4), 2021 | 23 | 2021 |
| Simultaneous profiling of DNA accessibility and gene expression dynamics with ATAC-seq and RNA-seq DG Hendrickson, I Soifer, BJ Wranik, D Botstein, R Scott McIsaac Computational Cell Biology: Methods and Protocols, 317-333, 2018 | 21 | 2018 |
| An estradiol‐inducible promoter enables fast, graduated control of gene expression in fission yeast MJ Ohira, DG Hendrickson, R Scott McIsaac, N Rhind Yeast 34 (8), 323-334, 2017 | 18 | 2017 |
