Charles W. O'Donnell
Charles W. O'Donnell
Postdoctoral Fellow - MIT, Harvard
Verified email at
Cited by
Cited by
Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape
RI Sherwood, T Hashimoto, CW O'donnell, S Lewis, AA Barkal, ...
Nature biotechnology 32 (2), 171-178, 2014
Aegis: A single-chip secure processor
GE Suh, CW O'Donnell, S Devadas
IEEE Design & Test of Computers 24 (6), 570-580, 2007
Design and implementation of the AEGIS single-chip secure processor using physical random functions
GE Suh, CW O'Donnell, I Sachdev, S Devadas
32nd International Symposium on Computer Architecture (ISCA'05), 25-36, 2005
Differentiated human stem cells resemble fetal, not adult, β cells
S Hrvatin, CW O’Donnell, F Deng, JR Millman, FW Pagliuca, P DiIorio, ...
Proceedings of the National Academy of Sciences 111 (8), 3038-3043, 2014
Opposing effects of glutamine and asparagine govern prion formation by intrinsically disordered proteins
R Halfmann, S Alberti, R Krishnan, N Lyle, CW O'Donnell, OD King, ...
Molecular cell 43 (1), 72-84, 2011
Epigenomic profiling reveals an association between persistence of DNA methylation and metabolic memory in the DCCT/EDIC type 1 diabetes cohort
Z Chen, F Miao, AD Paterson, JM Lachin, L Zhang, DE Schones, X Wu, ...
Proceedings of the National Academy of Sciences 113 (21), E3002-E3011, 2016
Virtual monotonic counters and count-limited objects using a TPM without a trusted OS
LFG Sarmenta, M Van Dijk, CW O'Donnell, J Rhodes, S Devadas
Proceedings of the first ACM workshop on Scalable trusted computing, 27-42, 2006
MARIS: method for analyzing RNA following intracellular sorting
S Hrvatin, F Deng, CW O'Donnell, DK Gifford, DA Melton
PloS one 9 (3), e89459, 2014
PUF-based random number generation
CW O'Donnell, GE Suh, S Devadas
A distant trophoblast-specific enhancer controls HLA-G expression at the maternal–fetal interface
LMR Ferreira, TB Meissner, TS Mikkelsen, W Mallard, CW O’Donnell, ...
Proceedings of the National Academy of Sciences 113 (19), 5364-5369, 2016
A method for probing the mutational landscape of amyloid structure
CW O'Donnell, J Waldispühl, M Lis, R Halfmann, S Devadas, S Lindquist, ...
Bioinformatics 27 (13), i34-i42, 2011
A global sampling approach to designing and reengineering RNA secondary structures
A Levin, M Lis, Y Ponty, CW O’donnell, S Devadas, B Berger, ...
Nucleic acids research 40 (20), 10041-10052, 2012
Information Leak in the Chord Lookup Protocol
CW O'Donnell, V Vaikuntanathan
Modeling ensembles of transmembrane β‐barrel proteins
J Waldispühl, CW O'Donnell, S Devadas, P Clote, B Berger
Proteins: Structure, Function, and Bioinformatics 71 (3), 1097-1112, 2008
Lynx: A programmatic SAT solver for the RNA-folding problem
V Ganesh, CW O’donnell, M Soos, S Devadas, MC Rinard, ...
International Conference on Theory and Applications of Satisfiability …, 2012
STITCHER: Dynamic assembly of likely amyloid and prion β‐structures from secondary structure predictions
AW Bryan Jr, CW O'Donnell, M Menke, LJ Cowen, S Lindquist, B Berger
Proteins: Structure, Function, and Bioinformatics 80 (2), 410-420, 2012
On the existence of hazard-free multi-level logic
SM Nowick, CW O'Donnell
Ninth International Symposium on Asynchronous Circuits and Systems, 2003 …, 2003
Proof of freshness: How to efficiently use an online single secure clock to secure shared untrusted memory
M Van Dijk, LFG Sarmenta, CW O’Donnell, S Devadas
Technical report, 2006
Learning biophysically-motivated parameters for alpha helix prediction
B Gassend, CW O'Donnell, W Thies, A Lee, M Van Dijk, S Devadas
BMC bioinformatics 8 (Suppl 5), S3, 2007
Efficient traversal of beta-sheet protein folding pathways using ensemble models
S Shenker, CW O’Donnell, S Devadas, B Berger, J Waldispühl
Research in Computational Molecular Biology, 408-423, 2011
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