Henk den Bakker
Title
Cited by
Cited by
Year
< i> Listeria monocytogenes</i> lineages: Genomics, evolution, ecology, and phenotypic characteristics
RH Orsi, HC Bakker, M Wiedmann
International Journal of Medical Microbiology 301 (2), 79-96, 2011
6742011
Listeria marthii sp. nov., isolated from the natural environment, Finger Lakes National Forest
LM Graves, LO Helsel, AG Steigerwalt, RE Morey, MI Daneshvar, SE Roof, ...
International journal of systematic and evolutionary microbiology 60 (6 …, 2010
3162010
Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss
HC den Bakker, CA Cummings, V Ferreira, P Vatta, RH Orsi, L Degoricija, ...
BMC genomics 11 (1), 688, 2010
1942010
Identification and characterization of psychrotolerant sporeformers associated with fluid milk production and processing
RA Ivy, ML Ranieri, NH Martin, HC den Bakker, BM Xavier, M Wiedmann, ...
Applied and environmental microbiology 78 (6), 1853-1864, 2012
1522012
Listeria floridensis sp. nov., Listeria aquatica sp. nov., Listeria cornellensis sp. nov., Listeria riparia sp. nov. and Listeria grandensis sp. nov., from agricultural and …
HC den Bakker, S Warchocki, EM Wright, AF Allred, C Ahlstrom, ...
International journal of systematic and evolutionary microbiology 64 (Pt_6 …, 2014
144*2014
Dissemination of the mcr-1 colistin resistance gene
HE Webb, SA Granier, M Marault, Y Millemann, HC den Bakker, ...
The Lancet Infectious Diseases 16 (2), 144-145, 2016
1412016
Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis
HC Den Bakker, MW Allard, D Bopp, EW Brown, J Fontana, Z Iqbal, ...
Emerging infectious diseases 20 (8), 1306, 2014
1412014
Genomic epidemiology: whole-genome-sequencing–powered surveillance and outbreak investigation of foodborne bacterial pathogens
X Deng, HC den Bakker, RS Hendriksen
Annual review of food science and technology 7, 353-374, 2016
1382016
Listeria booriae sp. nov. and Listeria newyorkensis sp. nov., from food processing environments in the USA
D Weller, A Andrus, M Wiedmann, HC den Bakker
International journal of systematic and evolutionary microbiology 65 (Pt_1 …, 2015
1362015
Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica
HC den Bakker, AIM Switt, G Govoni, CA Cummings, ML Ranieri, ...
BMC genomics 12 (1), 425, 2011
1332011
Whole-genome sequencing allows for improved identification of persistent Listeria monocytogenes in food-associated environments
MJ Stasiewicz, HF Oliver, M Wiedmann, HC den Bakker
Applied and environmental microbiology 81 (17), 6024-6037, 2015
1292015
Lineage specific recombination rates and microevolution in Listeria monocytogenes
HC Den Bakker, X Didelot, ED Fortes, KK Nightingale, M Wiedmann
BMC Evolutionary Biology 8 (1), 277, 2008
1142008
A whole-genome single nucleotide polymorphism-based approach to trace and identify outbreaks linked to a common Salmonella enterica subsp. enterica serovar Montevideo pulsed …
HC den Bakker, AI Moreno Switt, CA Cummings, K Hoelzer, L Degoricija, ...
Applied and environmental microbiology 77 (24), 8648-8655, 2011
103*2011
Ultrafast search of all deposited bacterial and viral genomic data
P Bradley, HC Den Bakker, EPC Rocha, G McVean, Z Iqbal
Nature biotechnology 37 (2), 152-159, 2019
101*2019
Comparison of typing methods with a new procedure based on sequence characterization for Salmonella serovar prediction
ML Ranieri, C Shi, AI Moreno Switt, HC Den Bakker, M Wiedmann
Journal of clinical microbiology 51 (6), 1786-1797, 2013
982013
Evolution and host specificity in the ectomycorrhizal genus Leccinum
HC Den Bakker, GC Zuccarello, TH Kuyper, ME Noordeloos
New Phytologist 163 (1), 201-215, 2004
972004
Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages
X Deng, PT Desai, HC den Bakker, M Mikoleit, B Tolar, E Trees, ...
Emerging infectious diseases 20 (9), 1481, 2014
852014
A population genetics-based and phylogenetic approach to understanding the evolution of virulence in the genus Listeria
HC den Bakker, BN Bundrant, ED Fortes, RH Orsi, M Wiedmann
Applied and environmental microbiology 76 (18), 6085-6100, 2010
812010
A revision of European species of Leccinum Gray and notes on extralimital species
HC Bakker, ME Noordeloos
PERSOONIA-LEIDEN- 18 (4), 511, 2005
782005
Salt stress phenotypes in Listeria monocytogenes vary by genetic lineage and temperature
TM Bergholz, HC den Bakker, ED Fortes, KJ Boor, M Wiedmann
Foodborne pathogens and disease 7 (12), 1537, 2010
772010
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Articles 1–20