Shahin Mohammadi
Shahin Mohammadi
Broad Institute
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Cited by
Cited by
Single-cell transcriptomic analysis of Alzheimer’s disease
H Mathys, J Davila-Velderrain, Z Peng, F Gao, S Mohammadi, JZ Young, ...
Nature 570 (7761), 332-337, 2019
Kavosh: a new algorithm for finding network motifs
ZRM Kashani, H Ahrabian, E Elahi, A Nowzari-Dalini, ES Ansari, S Asadi, ...
BMC bioinformatics 10 (1), 1-12, 2009
Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration
M Menon, S Mohammadi, J Davila-Velderrain, BA Goods, TD Cadwell, ...
Nature communications 10 (1), 1-9, 2019
Network similarity decomposition (nsd): A fast and scalable approach to network alignment
G Kollias, S Mohammadi, A Grama
IEEE Transactions on Knowledge and Data Engineering 24 (12), 2232-2243, 2011
Cell type-specific transcriptomics reveals that mutant Huntingtin leads to mitochondrial RNA release and neuronal innate immune activation
H Lee, RJ Fenster, SS Pineda, WS Gibbs, S Mohammadi, ...
Neuron 107 (5), 891-908. e8, 2020
A Critical Survey of Deconvolution Methods for Separating Cell-Types in Complex Tissues
S Mohammadi, N Zuckerman, A Goldsmith, A Grama
Proceedings of IEEE, Special Issue on Principles and Applications of Science …, 2016
Scope and limitations of yeast as a model organism for studying human tissue-specific pathways
S Mohammadi, B Saberidokht, S Subramaniam, A Grama
BMC systems biology 9 (1), 1-22, 2015
A geometric approach to characterize the functional identity of single cells
S Mohammadi, V Ravindra, DF Gleich, A Grama
Nature communications 9 (1), 1-10, 2018
Low rank spectral network alignment
H Nassar, N Veldt, S Mohammadi, A Grama, DF Gleich
Proceedings of the 2018 World Wide Web Conference, 619-628, 2018
Reconstruction of cell-type-specific interactomes at single-cell resolution
S Mohammadi, J Davila-Velderrain, M Kellis
Cell systems 9 (6), 559-568. e4, 2019
Triangular Alignment (TAME): A Tensor-based Approach for Higher-order Network Alignment
S Mohammadi, DF Gleich, TG Kolda, A Grama
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1-1, 2016
A fast approach to global alignment of protein-protein interaction networks
G Kollias, M Sathe, S Mohammadi, A Grama
BMC research notes 6 (1), 1-11, 2013
Author Correction: Single-cell transcriptomic analysis of Alzheimer’s disease
H Mathys, J Davila-Velderrain, Z Peng, F Gao, S Mohammadi, JZ Young, ...
Nature 571 (7763), E1-E1, 2019
A multiresolution framework to characterize single-cell state landscapes
S Mohammadi, J Davila-Velderrain, M Kellis
Nature communications 11 (1), 1-14, 2020
Single-cell dissection of schizophrenia reveals neurodevelopmental-synaptic axis and transcriptional resilience
WB Ruzicka, S Mohammadi, J Davila-Velderrain, S Subburaju, DR Tso, ...
MedRxiv, 2020
Spatial estimation of soil erosion in Iran using RUSLE model
S Mohammadi, H Karimzadeh, M Alizadeh
Iranian journal of Ecohydrology 5 (2), 551-569, 2018
Context-specific recommendation system for predicting similar pubmed articles
S Mohammadi, S Kylasa, G Kollias, A Grama
2016 IEEE 16th International Conference on Data Mining Workshops (ICDMW …, 2016
Biological network alignment
S Mohammadi, A Grama
Functional coherence of molecular networks in Bioinformatics, 97-136, 2012
A convex optimization approach for identification of human tissue-specific interactomes
S Mohammadi, A Grama
Bioinformatics 32 (12), 2016
Single-cell deconvolution of 3,000 post-mortem brain samples for eQTL and GWAS dissection in mental disorders
Y Park, L He, J Davila-Velderrain, L Hou, S Mohammadi, H Mathys, ...
BioRxiv, 2021
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