| Insights from 20 years of bacterial genome sequencing M Land, L Hauser, SR Jun, I Nookaew, MR Leuze, TH Ahn, T Karpinets, ... Functional & integrative genomics 15, 141-161, 2015 | 870 | 2015 |
| Proteomic landscape of Alzheimer’s Disease: novel insights into pathogenesis and biomarker discovery B Bai, D Vanderwall, Y Li, X Wang, S Poudel, H Wang, KK Dey, PC Chen, ... Molecular neurodegeneration 16 (1), 55, 2021 | 116 | 2021 |
| Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440 D Salvachúa, AZ Werner, I Pardo, M Michalska, BA Black, BS Donohoe, ... Proceedings of the National Academy of Sciences 117 (17), 9302-9310, 2020 | 98 | 2020 |
| Biogeography of microbial bile acid transformations along the murine gut S Marion, L Desharnais, N Studer, Y Dong, MD Notter, S Poudel, L Menin, ... Journal of lipid research 61 (11), 1450-1463, 2020 | 60 | 2020 |
| Functional analysis of the glucan degradation locus in Caldicellulosiruptor bescii reveals essential roles of component glycoside hydrolases in plant biomass deconstruction JM Conway, BS McKinley, NL Seals, D Hernandez, PA Khatibi, S Poudel, ... Applied and Environmental Microbiology 83 (24), e01828-17, 2017 | 50 | 2017 |
| Integrated omics analyses reveal the details of metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the … S Poudel, RJ Giannone, M Rodriguez, B Raman, MZ Martin, NL Engle, ... Biotechnology for biofuels 10, 1-14, 2017 | 44 | 2017 |
| Meta-omics-aided isolation of an elusive anaerobic arsenic-methylating soil bacterium K Viacava, J Qiao, A Janowczyk, S Poudel, N Jacquemin, KL Meibom, ... The ISME journal 16 (7), 1740-1749, 2022 | 25 | 2022 |
| Deep single-cell-type proteome profiling of mouse brain by nonsurgical AAV-mediated proximity labeling X Sun, H Sun, X Han, PC Chen, Y Jiao, Z Wu, X Zhang, Z Wang, M Niu, ... Analytical chemistry 94 (13), 5325-5334, 2022 | 20 | 2022 |
| 29‐Plex tandem mass tag mass spectrometry enabling accurate quantification by interference correction H Sun, S Poudel, D Vanderwall, DG Lee, Y Li, J Peng Proteomics 22 (19-20), 2100243, 2022 | 19 | 2022 |
| Metaproteomics reveals enzymatic strategies deployed by anaerobic microbiomes to maintain lignocellulose deconstruction at high solids P Chirania, EK Holwerda, RJ Giannone, X Liang, S Poudel, JC Ellis, ... Nature Communications 13 (1), 3870, 2022 | 19 | 2022 |
| Coculture with hemicellulose-fermenting microbes reverses inhibition of corn fiber solubilization by Clostridium thermocellum at elevated solids loadings D Beri, CD Herring, S Blahova, S Poudel, RJ Giannone, RL Hettich, ... Biotechnology for biofuels 14, 1-13, 2021 | 19 | 2021 |
| Peeling back the layers of crassulacean acid metabolism: functional differentiation between Kalanchoë fedtschenkoi epidermis and mesophyll proteomes PE Abraham, N Hurtado Castano, D Cowan‐Turner, J Barnes, S Poudel, ... The Plant Journal 103 (2), 869-888, 2020 | 17 | 2020 |
| The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth … S Poudel, RJ Giannone, M Basen, I Nookaew, FL Poole, RM Kelly, ... Biotechnology for biofuels 11, 1-18, 2018 | 17 | 2018 |
| Alzheimer’s disease-associated U1 snRNP splicing dysfunction causes neuronal hyperexcitability and cognitive impairment PC Chen, X Han, TI Shaw, Y Fu, H Sun, M Niu, Z Wang, Y Jiao, ... Nature aging 2 (10), 923-940, 2022 | 16 | 2022 |
| Impact of Fatty-Acid Labeling of Bacillus subtilis Membranes on the Cellular Lipidome and Proteome JD Nickels, S Poudel, S Chatterjee, A Farmer, D Cordner, SR Campagna, ... Frontiers in Microbiology 11, 914, 2020 | 12 | 2020 |
| Development of a sustainable green chemistry platform for production of acetone and downstream drop-in fuel and commodity products directly from biomass syngas via a novel … SD Simpson, T Abdalla, SD Brown, C Canter, R Conrado, J Daniell, ... Lanzatech, Inc., Skokie, IL (United States), 2019 | 12 | 2019 |
| JUMPn: a streamlined application for protein co-expression clustering and network analysis in proteomics D Vanderwall, P Suresh, Y Fu, JH Cho, TI Shaw, A Mishra, AA High, ... JoVE (Journal of Visualized Experiments), e62796, 2021 | 10 | 2021 |
| A viable new strategy for the discovery of peptide proteolytic cleavage products in plant-microbe interactions MI Villalobos Solis, S Poudel, C Bonnot, HK Shrestha, RL Hettich, ... Molecular Plant-Microbe Interactions 33 (10), 1177-1188, 2020 | 9 | 2020 |
| Integrated proteomics and lipidomics reveal that the swarming motility of Paenibacillus polymyxa is characterized by phospholipid modification, surfactant deployment, and … S Poudel, RJ Giannone, AT Farmer, SR Campagna, AN Bible, ... Frontiers in Microbiology 10, 491400, 2019 | 9 | 2019 |
| Genome-scale modeling of thermophilic microorganisms S Dahal, S Poudel, RA Thompson Network Biology, 103-119, 2017 | 9 | 2017 |
