| Roary: rapid large-scale prokaryote pan genome analysis AJ Page, CA Cummins, M Hunt, VK Wong, S Reuter, MTG Holden, ... Bioinformatics 31 (22), 3691-3693, 2015 | 4053 | 2015 |
| Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ... Nucleic acids research 43 (3), e15-e15, 2015 | 1909 | 2015 |
| Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data T Carver, SR Harris, M Berriman, J Parkhill, JA McQuillan Bioinformatics 28 (4), 464-469, 2012 | 1172 | 2012 |
| SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments AJ Page, B Taylor, AJ Delaney, J Soares, T Seemann, JA Keane, ... Microbial genomics 2 (4), e000056, 2016 | 991 | 2016 |
| Circlator: automated circularization of genome assemblies using long sequencing reads M Hunt, ND Silva, TD Otto, J Parkhill, JA Keane, SR Harris Genome biology 16, 1-10, 2015 | 881 | 2015 |
| The genomes of four tapeworm species reveal adaptations to parasitism IJ Tsai, M Zarowiecki, N Holroyd, A Garciarrubio, A Sanchez-Flores, ... Nature 496 (7443), 57-63, 2013 | 748 | 2013 |
| ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads M Hunt, AE Mather, L Sánchez-Busó, AJ Page, J Parkhill, JA Keane, ... Microbial genomics 3 (10), e000131, 2017 | 570 | 2017 |
| Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page, NA Feasey, ... Nature genetics 47 (6), 632-639, 2015 | 468 | 2015 |
| Epithelial IL-22RA1-mediated fucosylation promotes intestinal colonization resistance to an opportunistic pathogen TAN Pham, S Clare, D Goulding, JM Arasteh, MD Stares, HP Browne, ... Cell host & microbe 16 (4), 504-516, 2014 | 297 | 2014 |
| GeneDB—an annotation database for pathogens FJ Logan-Klumpler, N De Silva, U Boehme, MB Rogers, G Velarde, ... Nucleic acids research 40 (D1), D98-D108, 2012 | 280 | 2012 |
| Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans AP Jackson, JA Gamble, T Yeomans, GP Moran, D Saunders, D Harris, ... Genome research 19 (12), 2231-2244, 2009 | 267 | 2009 |
| Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data AJ Page, N De Silva, M Hunt, MA Quail, J Parkhill, SR Harris, TD Otto, ... Microbial genomics 2 (8), e000083, 2016 | 234 | 2016 |
| Optimal enzymes for amplifying sequencing libraries MA Quail, TD Otto, Y Gu, SR Harris, TF Skelly, JA McQuillan, ... Nature methods 9 (1), 10-11, 2012 | 229 | 2012 |
| IVA: accurate de novo assembly of RNA virus genomes M Hunt, A Gall, SH Ong, J Brener, B Ferns, P Goulder, E Nastouli, ... Bioinformatics 31 (14), 2374-2376, 2015 | 201 | 2015 |
| The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries L Barquist, M Mayho, C Cummins, AK Cain, CJ Boinett, AJ Page, ... Bioinformatics 32 (7), 1109-1111, 2016 | 190 | 2016 |
| The Genome Sequence of Trypanosoma brucei gambiense, Causative Agent of Chronic Human African Trypanosomiasis AP Jackson, M Sanders, A Berry, J McQuillan, MA Aslett, MA Quail, ... PLoS Neglected Tropical Diseases 4 (4), e658, 2010 | 175 | 2010 |
| Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species AP Jackson, A Berry, M Aslett, HC Allison, P Burton, J Vavrova-Anderson, ... Proceedings of the National Academy of Sciences 109 (9), 3416-3421, 2012 | 168 | 2012 |
| An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid VK Wong, S Baker, TR Connor, D Pickard, AJ Page, J Dave, N Murphy, ... Nature communications 7 (1), 12827, 2016 | 145 | 2016 |
| SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments. Microb Genom 2: e000056 AJ Page, B Taylor, AJ Delaney, J Soares, T Seemann, JA Keane, ... | 109 | 2016 |
| The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa SE Park, DT Pham, C Boinett, VK Wong, GD Pak, U Panzner, ... Nature communications 9 (1), 5094, 2018 | 107 | 2018 |
Andrew J. PageDirector of Technical Innovation, Theiagen GenomicsVerified email at quadram.ac.uk
