| Metabolic programs define dysfunctional immune responses in severe COVID-19 patients EA Thompson, K Cascino, AA Ordonez, W Zhou, A Vaghasia, ... Cell Reports, 108863, 2021 | 101 | 2021 |
| HOXB7 is an ERα cofactor in the activation of HER2 and multiple ER target genes leading to endocrine resistance K Jin, S Park, WW Teo, P Korangath, SS Cho, T Yoshida, B Győrffy, ... Cancer discovery 5 (9), 944-959, 2015 | 93 | 2015 |
| Sex differences in gene regulation in the dorsal root ganglion after nerve injury KE Stephens, W Zhou, Z Ji, Z Chen, S He, H Ji, Y Guan, SD Taverna BMC Genomics 20 (1), 147, 2019 | 69 | 2019 |
| Personalized prediction of EGFR mutation-induced drug resistance in lung cancer DD Wang, W Zhou, H Yan, M Wong, V Lee Scientific reports 3, 2855, 2013 | 68 | 2013 |
| Alpha shape and Delaunay triangulation in studies of protein-related interactions W Zhou, H Yan Briefings in Bioinformatics, 2012 | 53 | 2012 |
| Transcriptional outcomes and kinetic patterning of gene expression in response to NF-κB activation M Zhao, J Joy, W Zhou, S De, WH Wood III, KG Becker, H Ji, R Sen PLOS Biology 16 (9), e2006347, 2018 | 45 | 2018 |
| Single-cell regulome data analysis by SCRAT Z Ji, W Zhou, H Ji Bioinformatics, btx315, 2017 | 45 | 2017 |
| Distinct Cytokine and Chemokine Dysregulation in Hospitalized Children With Acute Coronavirus Disease 2019 and Multisystem Inflammatory Syndrome With Similar Levels of … N Peart Akindele, T Kouo, AH Karaba, O Gordon, KZJ Fenstermacher, ... The Journal of Infectious Diseases 224 (4), 606-615, 2021 | 36 | 2021 |
| Genome-wide prediction of DNase I hypersensitivity using gene expression W Zhou, B Sherwood, Z Ji, Y Xue, F Du, J Bai, M Ying, H Ji Nature Communications 8 (1), 1038, 2017 | 36 | 2017 |
| Differential cytokine signatures of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and influenza infection highlight key differences in pathobiology AH Karaba, W Zhou, LL Hsieh, A Figueroa, G Massaccesi, RE Rothman, ... Clinical Infectious Diseases 74 (2), 254-262, 2022 | 34* | 2022 |
| Reprogramming Transcription Factors Oct4 and Sox2 Induce a BRD-Dependent Immunosuppressive Transcriptome in GBM-Propagating Cells T Ma, C Hu, B Lal, W Zhou, Y Ma, M Ying, P Prinos, A Quiñones-Hinojosa, ... Cancer Research 81 (9), 2457-2469, 2021 | 34 | 2021 |
| Sequential Enhancer Sequestration Dysregulates Recombination Center Formation at the IgH Locus X Qiu, G Kumari, T Gerasimova, H Du, L Labaran, A Singh, S De, ... Molecular cell 70 (1), 21-33. e6, 2018 | 34 | 2018 |
| Single-cell ATAC-seq Signal Extraction and Enhancement with SCATE Z Ji, W Zhou, W Hou, H Ji Genome Biology 21 (1), 1-36, 2020 | 33 | 2020 |
| Analysis of surface structures of hydrogen bonding in protein–ligand interactions using the alpha shape model W Zhou, H Yan, Q Hao Chemical Physics Letters 545, 125-131, 2012 | 32 | 2012 |
| GLI transcriptional repression regulates tissue-specific enhancer activity in response to Hedgehog signaling RK Lex, Z Ji, KN Falkenstein, W Zhou, JL Henry, H Ji, SA Vokes eLife 9, e50670, 2020 | 31 | 2020 |
| Global prediction of chromatin accessibility using small-cell-number and single-cell RNA-seq W Zhou, Z Ji, W Fang, H Ji Nucleic acids research 47 (19), e121-e121, 2019 | 30 | 2019 |
| A discriminatory function for prediction of protein–DNA interactions based on alpha shape modeling W Zhou, H Yan Bioinformatics 26 (20), 2541-2548, 2010 | 29 | 2010 |
| GLI transcriptional repression is inert prior to Hedgehog pathway activation RK Lex, W Zhou, Z Ji, KN Falkenstein, KE Schuler, KE Windsor, JD Kim, ... Nature Communications 13 (1), 1-15, 2022 | 20 | 2022 |
| Prediction of DNA-binding protein based on statistical and geometric features and support vector machines W Zhou, H Yan Proteome science 9 (1), S1, 2011 | 20 | 2011 |
| A biomarker-authenticated model of schizophrenia implicating NPTX2 loss of function MF Xiao, SE Roh, J Zhou, CC Chien, BP Lucey, MT Craig, LN Hayes, ... Science Advances 7 (48), eabf6935, 2021 | 19 | 2021 |
Hongkai JiProfessor of Biostatistics, Johns Hopkins University Bloomberg School of Public HealthVerified email at jhsph.edu
