John van der Oost

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Willem M de VosProfessor @ Microbiology Wageningen Netherlands @Helsinki FinlandVerified email at wur.nl
Stan J.J. BrounsProfessor of Molecular Microbiology, Delft University of TechnologyVerified email at tudelft.nl
S.W.M. KengenAssistant professor Wageningen UniversityVerified email at wur.nl
Edze WestraProfessor of Microbiology, University of Exeter, Biosciences, ESIVerified email at exeter.ac.uk
Kira MakarovaNCBI, NIHVerified email at ncbi.nlm.nih.gov
Eugene KooninSenior Investigator, NCBI, NIHVerified email at ncbi.nlm.nih.gov
Raymond StaalsAssociate Professor, Wageningen UniversityVerified email at wur.nl
Prarthana MohanrajuWageningen University & ResearchVerified email at wur.nl
Hauke SmidtPersonal Chair Complex Microbial Ecosystems, Wageningen University & ResearchVerified email at wur.nl
Snijders apThe Francis Crick InstituteVerified email at crick.ac.uk
Daan C. SwartsAssistant Professor/Personal Investigator | Wageningen University & ResearchVerified email at wur.nl
Richard van KranenburgWageningen UniversityVerified email at wur.nl
Nico J. ClaassensAssociate Professor at Wageningen UniversityVerified email at wur.nl
Mark LevissonWageningen UniversityVerified email at wur.nl
Rodolphe BarrangouNorth Carolina State UniversityVerified email at ncsu.edu
Ioannis MougiakosDrVerified email at helmholtz-hiri.de
Thijs J. G. EttemaLaboratory of Microbiology, Wageningen University, The NetherlandsVerified email at wur.nl
Albert J. R. HeckBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center and Utrecht UniversityVerified email at uu.nl
Omar O. AbudayyehAssistant Professor, Harvard Medical SchoolVerified email at bwh.harvard.edu
Mark J DickmanProfessor of Bioanalytical Science and Engineering, Dept of Chemical and Biological EngineeringVerified email at sheffield.ac.uk

John van der Oost

Microbiology, Wageningen University

Verified email at wur.nl - Homepage

microbiology CRISPR Argonaute biosensor


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Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system B Zetsche, JS Gootenberg, OO Abudayyeh, IM Slaymaker, KS Makarova, ... cell 163 (3), 759-771, 2015	4939	2015
Small CRISPR RNAs guide antiviral defense in prokaryotes SJJ Brouns, MM Jore, M Lundgren, ER Westra, RJH Slijkhuis, ... Science 321 (5891), 960-964, 2008	3529	2008
Evolution and classification of the CRISPR–Cas systems KS Makarova, DH Haft, R Barrangou, SJJ Brouns, E Charpentier, ... Nature Reviews Microbiology 9 (6), 467-477, 2011	3450	2011
An updated evolutionary classification of CRISPR–Cas systems KS Makarova, YI Wolf, OS Alkhnbashi, F Costa, SA Shah, SJ Saunders, ... Nature reviews microbiology 13 (11), 722-736, 2015	2984	2015
Crystal structure of an ACh-binding protein reveals the ligand-binding domain of nicotinic receptors KS Brejc, WJ van Dijk, RV Klaassen, M Schuurmans, J Van der Oost, ... Nature 411 (6835), 269-276, 2001	2257	2001
Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants KS Makarova, YI Wolf, J Iranzo, SA Shmakov, OS Alkhnbashi, SJJ Brouns, ... Nature Reviews Microbiology 18 (2), 67-83, 2020	1996	2020
Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence E Semenova, MM Jore, KA Datsenko, A Semenova, ER Westra, B Wanner, ... Proceedings of the National Academy of Sciences 108 (25), 10098-10103, 2011	1049	2011
The complete genome of the crenarchaeon Sulfolobus solfataricus P2 Q She, RK Singh, F Confalonieri, Y Zivanovic, G Allard, MJ Awayez, ... Proceedings of the National Academy of Sciences 98 (14), 7835-7840, 2001	971	2001
Multiplex gene editing by CRISPR–Cpf1 using a single crRNA array B Zetsche, M Heidenreich, P Mohanraju, I Fedorova, J Kneppers, ... Nature Biotechnology 35 (1), 31-34, 2017	963	2017
Unravelling the structural and mechanistic basis of CRISPR–Cas systems J Van der Oost, ER Westra, RN Jackson, B Wiedenheft Nature Reviews Microbiology 12 (7), 479-492, 2014	869	2014
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome VJ Carrión, J Perez-Jaramillo, V Cordovez, V Tracanna, M De Hollander, ... Science 366 (6465), 606-612, 2019	770	2019
Codon bias as a means to fine-tune gene expression. T Quax, N Claassens, D Söll, J Van der Oost Molecular Cell 59, 149-161, 2015	750	2015
CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3 ER Westra, PBG van Erp, T Künne, SP Wong, RHJ Staals, CLC Seegers, ... Molecular Cell 46 (5), 595-605, 2012	748	2012
Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems P Mohanraju, KS Makarova, B Zetsche, F Zhang, EV Koonin, ... Science 353 (6299), aad5147, 2016	737	2016
CRISPR-based adaptive and heritable immunity in prokaryotes J Van der Oost, MM Jore, ER Westra, M Lundgren, SJJ Brouns Trends in Biochemical Sciences 34 (8), 401-407, 2009	731	2009
Structural basis for CRISPR RNA-guided DNA recognition by Cascade MM Jore, M Lundgren, E Van Duijn, JB Bultema, ER Westra, ... Nature structural & molecular biology 18 (5), 529-536, 2011	719	2011
Structures of the RNA-guided surveillance complex from a bacterial immune system B Wiedenheft, GC Lander, K Zhou, MM Jore, SJJ Brouns, J Van der Oost, ... Nature 477 (7365), 486-489, 2011	597	2011
Healthy human gut phageome P Manrique, B Bolduc, ST Walk, J van der Oost, WM de Vos, MJ Young Proceedings of the National Academy of Sciences 113 (37), 10400-10405, 2016	548	2016
Structural basis for guide RNA processing and seed-dependent DNA targeting by CRISPR-Cas12a DC Swarts, J van der Oost, M Jinek Molecular cell 66 (2), 221-233. e4, 2017	518	2017
The evolutionary journey of Argonaute proteins DC Swarts, K Makarova, Y Wang, K Nakanishi, RF Ketting, EV Koonin, ... Nature structural & molecular biology 21 (9), 743-753, 2014	508	2014

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