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Lee S. Katz
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Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes
A Moura, A Criscuolo, H Pouseele, MM Maury, A Leclercq, C Tarr, ...
Nature microbiology 2 (2), 16185, 2017
458*2017
Implementation of nationwide real-time whole-genome sequencing to enhance listeriosis outbreak detection and investigation
BR Jackson, C Tarr, E Strain, KA Jackson, A Conrad, H Carleton, LS Katz, ...
Reviews of Infectious Diseases 63 (3), 380-386, 2016
2802016
Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti
LS Katz, A Petkau, J Beaulaurier, S Tyler, ES Antonova, MA Turnsek, ...
MBio 4 (4), 2013
138*2013
Laboratory methods for the diagnosis of meningitis caused by neisseria meningitidis, streptococcus pneumoniae, and haemophilus influenza; WHO manual
D Castillo, B Harcourt, C Hatcher, M Jackson, L Katz, R Mair, L Mayer, ...
1292011
Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids
YHE Loh, LS Katz, MC Mims, TD Kocher, SV Yi, JT Streelman
Genome biology 9 (7), 1-12, 2008
1292008
Novel epidemic clones of Listeria monocytogenes, United States, 2011
S Lomonaco, B Verghese, P Gerner-Smidt, C Tarr, L Gladney, L Joseph, ...
Emerging infectious diseases 19 (1), 147-150, 2013
1252013
SNVPhyl: A Single Nucleotide Variant Phylogenomics pipeline for microbial genomic epidemiology
A Petkau, P Mabon, C Sieffert, NC Knox, J Cabral, M Iskander, M Iskander, ...
Microbial Genomics 3 (6), 2017
1202017
A comparative analysis of the Lyve-SET phylogenomics pipeline for genomic epidemiology of foodborne pathogens
LS Katz, T Griswold, AJ Williams-Newkirk, D Wagner, A Petkau, C Sieffert, ...
Frontiers in microbiology 8, 375, 2017
1032017
Notes from the Field: Listeriosis Associated with Stone Fruit—United States, 2014
BR Jackson, M Salter, C Tarr, A Conrad, E Harvey, L Steinbock, A Saupe, ...
MMWR, 2015
81*2015
Mashtree: a rapid comparison of whole genome sequence files
LS Katz, T Griswold, SS Morrison, JA Caravas, S Zhang, HC Den Bakker, ...
Journal of Open Source Software 4 (44), 2019
762019
A computational genomics pipeline for prokaryotic sequencing projects
AO Kislyuk, LS Katz, S Agrawal, MS Hagen, AB Conley, P Jayaraman, ...
Bioinformatics 26 (15), 1819-1826, 2010
742010
Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes isolates associated with an outbreak linked to …
Y Chen, Y Luo, H Carleton, R Timme, D Melka, T Muruvanda, C Wang, ...
Applied and environmental microbiology 83 (15), e00633-17, 2017
712017
Haemophilus haemolyticus Isolates Causing Clinical Disease
R Anderson, X Wang, EC Briere, LS Katz, AC Cohn, TA Clark, ...
Journal of Clinical Microbiology 50 (7), 2462-2465, 2012
712012
Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities
JE Kostka, SJ Green, L Rishishwar, O Prakash, LS Katz, ...
Journal of Bacteriology 194 (16), 4461-4462, 2012
652012
Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance
RE Timme, H Rand, M Shumway, EK Trees, M Simmons, R Agarwala, ...
PeerJ 5, e3893, 2017
502017
Comparison of classical multi-locus sequence typing software for next-generation sequencing data
AJ Page, NF Alikhan, HA Carleton, T Seemann, JA Keane, LS Katz
Microbial Genomics, 2017
492017
Evaluation of new biomarker genes for differentiating Haemophilus influenzae from Haemophilus haemolyticus
MJ Theodore, RD Anderson, X Wang, LS Katz, JT Vuong, ME Bell, ...
Journal of clinical microbiology 50 (4), 1422-1424, 2012
422012
Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection
T Azarian, A Ali, JA Johnson, D Mohr, M Prosperi, NM Veras, M Jubair, ...
MBio 5 (6), 2014
412014
Determination of evolutionary relationships of outbreak-associated Listeria monocytogenes strains of serotypes 1/2a and 1/2b by whole-genome sequencing
TM Bergholz, HC den Bakker, LS Katz, BJ Silk, KA Jackson, Z Kucerova, ...
Applied and environmental microbiology 82 (3), 928, 2016
372016
Multidrug-resistant IncA/C plasmid in Vibrio cholerae from Haiti
JP Folster, L Katz, A McCullough, MB Parsons, K Knipe, SA Sammons, ...
Emerging infectious diseases 20 (11), 1951, 2014
362014
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