| Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes A Moura, A Criscuolo, H Pouseele, MM Maury, A Leclercq, C Tarr, ... Nature microbiology 2 (2), 16185, 2017 | 624* | 2017 |
| Implementation of nationwide real-time whole-genome sequencing to enhance listeriosis outbreak detection and investigation BR Jackson, C Tarr, E Strain, KA Jackson, A Conrad, H Carleton, LS Katz, ... Reviews of Infectious Diseases 63 (3), 380-386, 2016 | 359 | 2016 |
| Mashtree: a rapid comparison of whole genome sequence files LS Katz, T Griswold, SS Morrison, JA Caravas, S Zhang, HC Den Bakker, ... Journal of Open Source Software 4 (44), 2019 | 188 | 2019 |
| SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology A Petkau, P Mabon, C Sieffert, NC Knox, J Cabral, M Iskander, M Iskander, ... Microbial genomics 3 (6), e000116, 2017 | 158 | 2017 |
| Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti LS Katz, A Petkau, J Beaulaurier, S Tyler, ES Antonova, MA Turnsek, ... MBio 4 (4), 2013 | 144* | 2013 |
| Novel epidemic clones of Listeria monocytogenes, United States, 2011 S Lomonaco, B Verghese, P Gerner-Smidt, C Tarr, L Gladney, L Joseph, ... Emerging infectious diseases 19 (1), 147-150, 2013 | 139 | 2013 |
| Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids YHE Loh, LS Katz, MC Mims, TD Kocher, SV Yi, JT Streelman Genome biology 9 (7), 1-12, 2008 | 132 | 2008 |
| A comparative analysis of the Lyve-SET phylogenomics pipeline for genomic epidemiology of foodborne pathogens LS Katz, T Griswold, AJ Williams-Newkirk, D Wagner, A Petkau, C Sieffert, ... Frontiers in microbiology 8, 375, 2017 | 131 | 2017 |
| Laboratory methods for the diagnosis of meningitis caused by neisseria meningitidis, streptococcus pneumoniae, and haemophilus influenza; WHO manual D Castillo, B Harcourt, C Hatcher, M Jackson, L Katz, R Mair, L Mayer, ... | 130 | 2011 |
| Notes from the Field: Listeriosis Associated with Stone Fruit—United States, 2014 BR Jackson, M Salter, C Tarr, A Conrad, E Harvey, L Steinbock, A Saupe, ... MMWR, 2015 | 90 | 2015 |
| Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes isolates associated with an outbreak linked to … Y Chen, Y Luo, H Carleton, R Timme, D Melka, T Muruvanda, C Wang, ... Applied and environmental microbiology 83 (15), e00633-17, 2017 | 83 | 2017 |
| Haemophilus haemolyticus Isolates Causing Clinical Disease R Anderson, X Wang, EC Briere, LS Katz, AC Cohn, TA Clark, ... Journal of Clinical Microbiology 50 (7), 2462-2465, 2012 | 83 | 2012 |
| A computational genomics pipeline for prokaryotic sequencing projects AO Kislyuk, LS Katz, S Agrawal, MS Hagen, AB Conley, P Jayaraman, ... Bioinformatics 26 (15), 1819-1826, 2010 | 80 | 2010 |
| Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities JE Kostka, SJ Green, L Rishishwar, O Prakash, LS Katz, ... Journal of Bacteriology 194 (16), 4461-4462, 2012 | 75 | 2012 |
| Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance RE Timme, H Rand, M Shumway, EK Trees, M Simmons, R Agarwala, ... PeerJ 5, e3893, 2017 | 59 | 2017 |
| Use of Whole Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States EL Stevens, HA Carleton, J Beal, GE Tillman, RL Lindsey, AC Lauer, ... Journal of Food Protection 85 (5), 755-772, 2022 | 57 | 2022 |
| Comparison of classical multi-locus sequence typing software for next-generation sequencing data AJ Page, NF Alikhan, HA Carleton, T Seemann, JA Keane, LS Katz Microbial Genomics, 2017 | 51 | 2017 |
| Evaluation of new biomarker genes for differentiating Haemophilus influenzae from Haemophilus haemolyticus MJ Theodore, RD Anderson, X Wang, LS Katz, JT Vuong, ME Bell, ... Journal of clinical microbiology 50 (4), 1422-1424, 2012 | 50 | 2012 |
| Determination of evolutionary relationships of outbreak-associated Listeria monocytogenes strains of serotypes 1/2a and 1/2b by whole-genome sequencing TM Bergholz, HC den Bakker, LS Katz, BJ Silk, KA Jackson, Z Kucerova, ... Applied and environmental microbiology 82 (3), 928, 2016 | 46 | 2016 |
| Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection T Azarian, A Ali, JA Johnson, D Mohr, M Prosperi, NM Veras, M Jubair, ... MBio 5 (6), 2014 | 46 | 2014 |
Heather CarletonChief, Enteric Diseases Laboratory Branch, US Centers for Disease ControlVerified email at cdc.gov
