Douglas Pires

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David AscherUniversity of Queensland; Baker Institute; Bio21 InstituteVerified email at uq.edu.au
Tom L BlundellEmeritus Professor of Biochemistry, University of CambridgeVerified email at cam.ac.uk
Carlos RodriguesBaker Heart and Diabetes InstituteVerified email at baker.edu.au
Yoochan MyungUniversity of MelbourneVerified email at student.unimelb.edu.au
Wagner Meira, Jr.Professor of Computer Science, Universidade Federal de Minas Gerais, BrazilVerified email at dcc.ufmg.br
Carlos Henrique da SilveiraProfessor, Federal University of Itajuba - UNIFEIVerified email at unifei.edu.br
Stephanie PortelliUniversity of MelbourneVerified email at student.unimelb.edu.au
Emma R. WoodwardManchester Centre for Genomic MedicineVerified email at mft.nhs.uk
Azadeh AlaviSchool of Computing Technologies, RMIT UniversityVerified email at rmit.edu.au
Joicymara XavierUFVJM - Universidade Federal dos Vales do Jequitinhonha e Mucuri; UFMG - Universidade Federal deVerified email at ufvjm.edu.br
Taane G. ClarkProfessor of Genomics & Global Health, London School of Hygiene and Tropical MedicineVerified email at lshtm.ac.uk
Grant A. Hill-CawthorneUK ParliamentVerified email at parliament.uk
Francesc CollLondon School of Hygiene & Tropical MedicineVerified email at lshtm.ac.uk
arnab painProfessor, KAUST; Distinguished Professor, Hokkaido UniversityVerified email at kaust.edu.sa
Rigouts LeenInstitute of Tropical MedicineVerified email at itg.be
Dorgival GuedesAssociate Professor, Universidade Federal de Minas GeraisVerified email at dcc.ufmg.br
Pâmela Marinho RezendeDoutoranda em Bioinformática, Universidade Federal de Minas GeraisVerified email at minas.fiocruz.br
Cor J FontesProfessor, Faculdade de Medicina, Universidade Federal de Mato Grosso, BrazilVerified email at ufmt.br
Elston Neil D'SouzaUniversity of OxfordVerified email at well.ox.ac.uk
Moshe OlshanskyBaker Heart & Diabetes InstituteVerified email at baker.edu.au

Douglas Pires

School of Computing and Information Systems, The University of Melbourne

Verified email at unimelb.edu.au - Homepage

Computational Biology Structural Bioinformatics Health Informatics Machine Learning Artificial Intelligence


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pkCSM: predicting small-molecule pharmacokinetic and toxicity properties using graph-based signatures DEV Pires, TL Blundell, DB Ascher Journal of medicinal chemistry 58 (9), 4066-4072, 2015	1407	2015
mCSM: predicting the effects of mutations in proteins using graph-based signatures DEV Pires, DB Ascher, TL Blundell Bioinformatics 30 (3), 335-342, 2014	646	2014
DUET: a server for predicting effects of mutations on protein stability using an integrated computational approach DEV Pires, DB Ascher, TL Blundell Nucleic acids research 42 (W1), W314-W319, 2014	549	2014
DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability CHM Rodrigues, DEV Pires, DB Ascher Nucleic acids research 46 (W1), W350-W355, 2018	477	2018
mCSM-PPI2: predicting the effects of mutations on protein–protein interactions CHM Rodrigues, Y Myung, DEV Pires, DB Ascher Nucleic acids research 47 (W1), W338-W344, 2019	151	2019
Tumour risks and genotype–phenotype correlations associated with germline variants in succinate dehydrogenase subunit genes SDHB, SDHC and SDHD KA Andrews, DB Ascher, DEV Pires, DR Barnes, L Vialard, RT Casey, ... Journal of medical genetics 55 (6), 384-394, 2018	134	2018
mCSM-lig: quantifying the effects of mutations on protein-small molecule affinity in genetic disease and emergence of drug resistance DEV Pires, TL Blundell, DB Ascher Scientific reports 6 (1), 1-8, 2016	105	2016
Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance J Phelan, F Coll, R McNerney, DB Ascher, DEV Pires, N Furnham, ... BMC medicine 14 (1), 1-13, 2016	98	2016
Protein cutoff scanning: A comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins CH da Silveira, DEV Pires, RC Minardi, C Ribeiro, CJM Veloso, ... Proteins: Structure, Function, and Bioinformatics 74 (3), 727-743, 2009	91	2009
CSM-lig: a web server for assessing and comparing protein–small molecule affinities DEV Pires, DB Ascher Nucleic acids research 44 (W1), W557-W561, 2016	88	2016
Twelve novel HGD gene variants identified in 99 alkaptonuria patients: focus on ‘black bone disease’in Italy M Nemethova, J Radvanszky, L Kadasi, DB Ascher, DEV Pires, ... European Journal of Human Genetics 24 (1), 66-72, 2016	88	2016
In silico functional dissection of saturation mutagenesis: Interpreting the relationship between phenotypes and changes in protein stability, interactions and activity DEV Pires, J Chen, TL Blundell, DB Ascher Scientific reports 6 (1), 1-11, 2016	80	2016
Germline Mutations in the CDKN2B Tumor Suppressor Gene Predispose to Renal Cell CarcinomaCDKN2B Tumor Suppressor Gene and Renal Cell Carcinoma M Jafri, NC Wake, DB Ascher, DEV Pires, D Gentle, MR Morris, ... Cancer discovery 5 (7), 723-729, 2015	77	2015
mCSM–NA: predicting the effects of mutations on protein–nucleic acids interactions DEV Pires, DB Ascher Nucleic acids research 45 (W1), W241-W246, 2017	76	2017
mCSM-AB: a web server for predicting antibody–antigen affinity changes upon mutation with graph-based signatures DEV Pires, DB Ascher Nucleic acids research 44 (W1), W469-W473, 2016	74	2016
DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations CHM Rodrigues, DEV Pires, DB Ascher Protein Science 30 (1), 60-69, 2021	72	2021
Platinum: a database of experimentally measured effects of mutations on structurally defined protein–ligand complexes DEV Pires, TL Blundell, DB Ascher Nucleic acids research 43 (D1), D387-D391, 2015	72	2015
Cutoff Scanning Matrix (CSM): structural classification and function prediction by protein inter-residue distance patterns DEV Pires, RC de Melo-Minardi, MA dos Santos, CH da Silveira, ... BMC Genomics 12 (Suppl 4), S12, 2011	65	2011
Variation in Human Cytochrome P-450 Drug-Metabolism Genes: A Gateway to the Understanding of Plasmodium vivax Relapses ACR Silvino, GL Costa, FCF Araújo, DB Ascher, DEV Pires, CJF Fontes, ... PloS one 11 (7), e0160172, 2016	59	2016
aCSM: Noise-free graph-based signatures to large-scale receptor-based ligand prediction DEV Pires, RC de Melo-Minardi, CH da Silveira, FF Campos, W Meira Bioinformatics 29 (7), 855-861, 2013	53	2013

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