| The B73 maize genome: complexity, diversity, and dynamics PS Schnable, D Ware, RS Fulton, JC Stein, F Wei, S Pasternak, C Liang, ... science 326 (5956), 1112, 2009 | 4083 | 2009 |
| The genome of the domesticated apple (Malus× domestica Borkh.) R Velasco, A Zharkikh, J Affourtit, A Dhingra, A Cestaro, A Kalyanaraman, ... Nature genetics 42 (10), 833-839, 2010 | 2131 | 2010 |
| Genome sequencing and analysis of the model grass Brachypodium distachyon DNA sequencing and assembly Barry Kerrie 5 Lucas Susan 5 Harmon-Smith ... Nature 463 (7282), 763-768, 2010 | 1767 | 2010 |
| Parallel heuristics for scalable community detection H Lu, M Halappanavar, A Kalyanaraman Parallel Computing 47, 19-37, 2015 | 176 | 2015 |
| Efficient clustering of large EST data sets on parallel computers A Kalyanaraman, S Aluru, S Kothari, V Brendel Nucleic Acids Research 31 (11), 2963-2974, 2003 | 114 | 2003 |
| Network-on-chip hardware accelerators for biological sequence alignment S Sarkar, GR Kulkarni, PP Pande, A Kalyanaraman Computers, IEEE Transactions on 59 (1), 29-41, 2010 | 78 | 2010 |
| Distributed louvain algorithm for graph community detection S Ghosh, M Halappanavar, A Tumeo, A Kalyanaraman, H Lu, ... 2018 IEEE international parallel and distributed processing symposium (IPDPS …, 2018 | 73 | 2018 |
| Efficient algorithms and software for detection of full-length LTR retrotransposons A Kalyanaraman, S Aluru Computational Systems Bioinformatics Conference, 2005. Proceedings. 2005 …, 2005 | 63 | 2005 |
| Hardware accelerators for biocomputing: A survey S Sarkar, T Majumder, A Kalyanaraman, PP Pande Proceedings of 2010 IEEE International Symposium on Circuits and Systems …, 2010 | 62 | 2010 |
| Space and time efficient parallel algorithms and software for EST clustering A Kalyanaraman, S Aluru, V Brendel, S Kothari IEEE Transactions on parallel and distributed systems 14 (12), 1209-1221, 2003 | 59 | 2003 |
| Detailed analysis of a contiguous 22-Mb region of the maize genome F Wei, JC Stein, C Liang, J Zhang, RS Fulton, RS Baucom, E De Paoli, ... PloS Genetics 5 (11), e1000728, 2009 | 53 | 2009 |
| A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans M Mitreva, AA Elling, M Dante, AP Kloek, A Kalyanaraman, S Aluru, ... Molecular Genetics and Genomics 272 (2), 138-148, 2004 | 49 | 2004 |
| Assembling genomes on large-scale parallel computers A Kalyanaraman, SJ Emrich, PS Schnable, S Aluru Proceedings 20th IEEE International Parallel & Distributed Processing …, 2006 | 44 | 2006 |
| Attenuation of virulence in an apicomplexan hemoparasite results in reduced genome diversity at the population level A Lau, A Kalyanaraman, I Echaide, G Palmer, R Bock, M Pedroni, ... BMC genomics 12 (1), 410, 2011 | 42 | 2011 |
| Algorithms for balanced graph colorings with applications in parallel computing H Lu, M Halappanavar, D Chavarria-Miranda, AH Gebremedhin, ... IEEE Transactions on Parallel and Distributed Systems 28 (5), 1240-1256, 2016 | 39* | 2016 |
| BioEarth: Envisioning and developing a new regional earth system model to inform natural and agricultural resource management JC Adam, JC Stephens, SH Chung, MP Brady, RD Evans, CE Kruger, ... Climatic Change 129 (3), 555-571, 2015 | 38 | 2015 |
| pGraph: Efficient Parallel Construction of Large-Scale Protein Sequence Homology Graphs C Wu, A Kalyanaraman, WR Cannon | 38* | |
| Efficient detection of communities in biological bipartite networks P Pesántez-Cabrera, A Kalyanaraman IEEE/ACM transactions on computational biology and bioinformatics 16 (1 …, 2017 | 37* | 2017 |
| Scalable static and dynamic community detection using grappolo M Halappanavar, H Lu, A Kalyanaraman, A Tumeo 2017 IEEE High Performance Extreme Computing Conference (HPEC), 1-6, 2017 | 33 | 2017 |
| MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification A Kalyanaraman, WR Cannon, B Latt, DJ Baxter Bioinformatics 27 (21), 3072-3073, 2011 | 31 | 2011 |
Mahantesh HalappanavarChief Scientist & Group Leader, Pacific Northwest National LaboratoryVerified email at pnnl.gov
