Ananth Kalyanaraman

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Mahantesh HalappanavarChief Scientist & Group Leader, Pacific Northwest National LaboratoryVerified email at pnnl.gov
Partha PandeWashington State UniversityVerified email at wsu.edu
Srinivas AluruRegents Professor and Executive Director of Institute for Data Engineering and Science, Georgia TechVerified email at cc.gatech.edu
Hao LuOak Ridge National labVerified email at ornl.gov
Antonino TumeoPacific Northwest National LaboratoryVerified email at pnnl.gov
Turbo MajumderPrincipal Power and Performance Engineer, MicrosoftVerified email at microsoft.com
Marco MinutoliPacific Northwest National LaboratoryVerified email at pnnl.gov
Sayan GhoshComputer Scientist, Pacific Northwest National LaboratoryVerified email at pnnl.gov
Assefaw GebremedhinWashington State University, School of EECSVerified email at eecs.wsu.edu
Daniel Chavarría-MirandaResearch Scientist, Pacific Northwest National LaboratoryVerified email at pnl.gov
Sriram KrishnamoorthyGoogleVerified email at google.com
Methun KamruzzamanSandia National LaboratoriesVerified email at sandia.gov
William R. CannonPacific Northwest National LaboratoryVerified email at pnnl.gov
Bala KrishnamoorthyProfessor of Mathematics, Washington State UniversityVerified email at wsu.edu
Patrick SchnableIowa State UniversityVerified email at iastate.edu
Andy WuResearch ScientistVerified email at xerox.com
Inna Campo-RytsarevaData Scientist at IBMVerified email at us.ibm.com
Volker BrendelProfessor of Biology and Computer Science, Indiana UniversityVerified email at indiana.edu
Souradip SarkarBehavioral Synthesis at Cadence Design SystemsVerified email at cadence.com

Ananth Kalyanaraman

Other namesAnantharaman Kalyanaraman

Washington State University, Pacific Northwest National Laboratory

Verified email at wsu.edu - Homepage

Parallel algorithms HPC Computational biology and bioinformatics graph algorithms AI for agriculture


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The B73 maize genome: complexity, diversity, and dynamics PS Schnable, D Ware, RS Fulton, JC Stein, F Wei, S Pasternak, C Liang, ... science 326 (5956), 1112, 2009	4649	2009
The genome of the domesticated apple (Malus × domestica Borkh.) R Velasco, A Zharkikh, J Affourtit, A Dhingra, A Cestaro, A Kalyanaraman, ... Nature genetics 42 (10), 833-839, 2010	2404	2010
Genome sequencing and analysis of the model grass Brachypodium distachyon DNA sequencing and assembly Barry Kerrie 5 Lucas Susan 5 Harmon-Smith ... Nature 463 (7282), 763-768, 2010	1931	2010
Parallel heuristics for scalable community detection H Lu, M Halappanavar, A Kalyanaraman Parallel Computing 47, 19-37, 2015	253	2015
Distributed louvain algorithm for graph community detection S Ghosh, M Halappanavar, A Tumeo, A Kalyanaraman, H Lu, ... 2018 IEEE international parallel and distributed processing symposium (IPDPS …, 2018	162	2018
Efficient clustering of large EST data sets on parallel computers A Kalyanaraman, S Aluru, S Kothari, V Brendel Nucleic Acids Research 31 (11), 2963-2974, 2003	115	2003
Network-on-chip hardware accelerators for biological sequence alignment S Sarkar, GR Kulkarni, PP Pande, A Kalyanaraman Computers, IEEE Transactions on 59 (1), 29-41, 2010	81	2010
Efficient algorithms and software for detection of full-length LTR retrotransposons A Kalyanaraman, S Aluru Computational Systems Bioinformatics Conference, 2005. Proceedings. 2005 …, 2005	66	2005
Hardware accelerators for biocomputing: A survey S Sarkar, T Majumder, A Kalyanaraman, PP Pande Proceedings of 2010 IEEE International Symposium on Circuits and Systems …, 2010	62	2010
Scalable static and dynamic community detection using grappolo M Halappanavar, H Lu, A Kalyanaraman, A Tumeo 2017 IEEE High Performance Extreme Computing Conference (HPEC), 1-6, 2017	60	2017
Space and time efficient parallel algorithms and software for EST clustering A Kalyanaraman, S Aluru, V Brendel, S Kothari IEEE Transactions on parallel and distributed systems 14 (12), 1209-1221, 2003	58	2003
Detailed analysis of a contiguous 22-Mb region of the maize genome F Wei, JC Stein, C Liang, J Zhang, RS Fulton, RS Baucom, E De Paoli, ... PloS Genetics 5 (11), e1000728, 2009	55	2009
Efficient detection of communities in biological bipartite networks P Pesántez-Cabrera, A Kalyanaraman IEEE/ACM transactions on computational biology and bioinformatics 16 (1 …, 2017	54*	2017
Algorithms for balanced graph colorings with applications in parallel computing H Lu, M Halappanavar, D Chavarria-Miranda, AH Gebremedhin, ... IEEE Transactions on Parallel and Distributed Systems 28 (5), 1240-1256, 2016	54*	2016
A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans M Mitreva, AA Elling, M Dante, AP Kloek, A Kalyanaraman, S Aluru, ... Molecular Genetics and Genomics 272 (2), 138-148, 2004	54	2004
BioEarth: Envisioning and developing a new regional earth system model to inform natural and agricultural resource management JC Adam, JC Stephens, SH Chung, MP Brady, RD Evans, CE Kruger, ... Climatic Change 129, 555-571, 2015	45	2015
Attenuation of virulence in an apicomplexan hemoparasite results in reduced genome diversity at the population level A Lau, A Kalyanaraman, I Echaide, G Palmer, R Bock, M Pedroni, ... BMC genomics 12 (1), 410, 2011	43	2011
Assembling genomes on large-scale parallel computers A Kalyanaraman, SJ Emrich, PS Schnable, S Aluru Proceedings 20th IEEE International Parallel & Distributed Processing …, 2006	43	2006
pGraph: Efficient Parallel Construction of Large-Scale Protein Sequence Homology Graphs C Wu, A Kalyanaraman, WR Cannon	40*
Hardware accelerators in computational biology: Application, potential, and challenges T Majumder, PP Pande, A Kalyanaraman IEEE Design & Test 31 (1), 8-18, 2013	36	2013

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