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Rex R Malmstrom
Rex R Malmstrom
Staff Scientist / Director Microscale Applications Research Group; DOE Joint Genome Institute
Verified email at lbl.gov - Homepage
Title
Cited by
Cited by
Year
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
15152017
Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus
N Kashtan, SE Roggensack, S Rodrigue, JW Thompson, SJ Biller, A Coe, ...
Science 344 (6182), 416-420, 2014
5802014
Minimum information about an uncultivated virus genome (MIUViG)
S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ...
Nature biotechnology 37 (1), 29-37, 2019
4572019
Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
J McCarren, JW Becker, DJ Repeta, Y Shi, CR Young, RR Malmstrom, ...
Proceedings of the National Academy of Sciences 107 (38), 16420-16427, 2010
4222010
Whole genome amplification and de novo assembly of single bacterial cells
S Rodrigue, RR Malmstrom, AM Berlin, BW Birren, MR Henn, ...
PloS one 4 (9), e6864, 2009
3762009
The epigenomic landscape of prokaryotes
MJ Blow, TA Clark, CG Daum, AM Deutschbauer, A Fomenkov, R Fries, ...
PLoS genetics 12 (2), e1005854, 2016
3332016
Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics
C Rinke, J Lee, N Nath, D Goudeau, B Thompson, N Poulton, E Dmitrieff, ...
Nature protocols 9 (5), 1038-1048, 2014
3032014
Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean
RR Malmstrom, RP Kiene, MT Cottrell, DL Kirchman
Applied and Environmental Microbiology 70 (7), 4129-4135, 2004
2702004
Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface
AJ Probst, B Ladd, JK Jarett, DE Geller-McGrath, CMK Sieber, ...
Nature microbiology 3 (3), 328-336, 2018
2442018
Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans
RR Malmstrom, A Coe, GC Kettler, AC Martiny, J Frias-Lopez, ER Zinser, ...
The ISME journal 4 (10), 1252-1264, 2010
2442010
Biogeography of major bacterial groups in the Delaware Estuary
DL Kirchman, AI Dittel, RR Malmstrom, MT Cottrell
Limnology and oceanography 50 (5), 1697-1706, 2005
2392005
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
ML Bendall, SLR Stevens, LK Chan, S Malfatti, P Schwientek, J Tremblay, ...
The ISME journal 10 (7), 1589-1601, 2016
2332016
Standing stocks and activity of Archaea and Bacteria in the western Arctic Ocean
DL Kirchman, H Elifantz, AI Dittel, RR Malmstrom, MT Cottrell
Limnology and Oceanography 52 (2), 495-507, 2007
2172007
Unlocking short read sequencing for metagenomics
S Rodrigue, AC Materna, SC Timberlake, MC Blackburn, RR Malmstrom, ...
PloS one 5 (7), e11840, 2010
2042010
Genome-wide identification of bacterial plant colonization genes
BJ Cole, ME Feltcher, RJ Waters, KM Wetmore, TS Mucyn, EM Ryan, ...
PLoS Biol 15 (9), e2002860, 2017
1912017
Visualizing in situ translational activity for identifying and sorting slow-growing archaeal− bacterial consortia
R Hatzenpichler, SA Connon, D Goudeau, RR Malmstrom, T Woyke, ...
Proceedings of the National Academy of Sciences 113 (28), E4069-E4078, 2016
1882016
Decontamination of MDA reagents for single cell whole genome amplification
T Woyke, A Sczyrba, J Lee, C Rinke, D Tighe, S Clingenpeel, ...
PloS one 6 (10), e26161, 2011
1832011
Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean
RR Malmstrom, MT Cottrell, H Elifantz, DL Kirchman
Applied and environmental microbiology 71 (6), 2979-2986, 2005
1802005
Niche differentiation is spatially and temporally regulated in the rhizosphere
EE Nuccio, E Starr, U Karaoz, EL Brodie, J Zhou, SG Tringe, ...
The ISME journal 14 (4), 999-1014, 2020
1632020
Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage
TW Ghylin, SL Garcia, F Moya, BO Oyserman, P Schwientek, KT Forest, ...
The ISME journal 8 (12), 2503-2516, 2014
1632014
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