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Ratul Chowdhury
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Single-sequence protein structure prediction using language models from deep learning
R Chowdhury, N Bouatta, S Biswas, C Rochereau, GM Church, PK Sorger, ...
Nature Biotechnology, 2021
2502021
Conversion of slaughterhouse and poultry farm animal fats and wastes to biodiesel: Parametric sensitivity and fuel quality assessment
R Chakraborty, AK Gupta, R Chowdhury
Renewable and Sustainable Energy Reviews 29, 120-134, 2014
1292014
Artificial water channels enable fast and selective water permeation through water-wire networks
W Song, H Joshi, R Chowdhury, JS Najem, Y Shen, C Lang, ...
Nature nanotechnology 15 (1), 73-79, 2020
1222020
From directed evolution to computational enzyme engineering—a review
R Chowdhury, CD Maranas
AIChE Journal 66 (3), e16847, 2020
1012020
Computational prediction of the effect of amino acid changes on the binding affinity between SARS-CoV-2 spike RBD and human ACE2
C Chen, VS Boorla, D Banerjee, R Chowdhury, VS Cavener, RH Nissly, ...
Proceedings of the National Academy of Sciences 118 (42), e2106480118, 2021
722021
Rapid fabrication of precise high-throughput filters from membrane protein nanosheets
YM Tu, W Song, T Ren, Y Shen, R Chowdhury, P Rajapaksha, TE Culp, ...
Nature Materials 19 (3), 347-354, 2020
692020
Highly Active C8-Acyl-ACP Thioesterase Variant Isolated by a Synthetic Selection Strategy
NJ Hernández Lozada, RY Lai, TR Simmons, KA Thomas, R Chowdhury, ...
ACS Synthetic Biology 7 (9), 2205-2215, 2018
682018
Facile affinity maturation of antibody variable domains using natural diversity mutagenesis
KE Tiller, R Chowdhury, T Li, SD Ludwig, S Sen, CD Maranas, PM Tessier
Frontiers in immunology 8, 286219, 2017
582017
Computational biophysical characterization of the SARS-CoV-2 spike protein binding with the ACE2 receptor and implications for infectivity
R Chowdhury, VS Boorla, CD Maranas
Computational and structural biotechnology journal 18, 2573-2582, 2020
57*2020
Foldamer-based ultrapermeable and highly selective artificial water channels that exclude protons
A Roy, J Shen, H Joshi, W Song, YM Tu, R Chowdhury, R Ye, N Li, C Ren, ...
Nature Nanotechnology 16 (8), 911-917, 2021
542021
PoreDesigner for tuning solute selectivity in a robust and highly permeable outer membrane pore
R Chowdhury, T Ren, M Shankla, K Decker, M Grisewood, J Prabhakar, ...
Nature communications 9 (1), 3661, 2018
542018
OptMAVEn-2.0: de novo design of variable antibody regions against targeted antigen epitopes
R Chowdhury, MF Allan, CD Maranas
Antibodies 7 (3), 23, 2018
512018
Using gene essentiality and synthetic lethality information to correct yeast and CHO cell genome-scale models
R Chowdhury, A Chowdhury, CD Maranas
Metabolites 5 (4), 536-570, 2015
462015
Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2
JÁ Patiño-Galindo, I Filip, R Chowdhury, CD Maranas, PK Sorger, ...
Genome Medicine 124 (13), 2021
442021
7 log virus removal in a simple functionalized sand filter
L Samineni, B Xiong, R Chowdhury, A Pei, L Kuehster, H Wang, R Dickey, ...
Environmental Science & Technology 53 (21), 12706-12714, 2019
212019
Directed Evolution Reveals the Functional Sequence Space of an Adenylation Domain Specificity Code
K Throckmorton, V Vinnik, R Chowdhury, T Cook, MG Chevrette, ...
ACS chemical biology, 2019
192019
Application of ANFIS model to optimise the photocatalytic degradation of chlorhexidine digluconate
S Sarkar, R Chowdhury, R Das, S Chakraborty, H Choi, C Bhattacharjee
RSC Advances 4 (40), 21141-21150, 2014
172014
A new type of artificial water channels
A Noy, MAC Wanunu
Paper Highlight ►Nature nanotechnology 15 (1), 9-10, 2020
112020
IPRO+/−: Computational Protein Design Tool Allowing for Insertions and Deletions
R Chowdhury, MJ Grisewood, VS Boorla, Q Yan, BF Pfleger
Structure 28 (8), Doi Link: 10.1016/j.str.2020.08.003, 2020
82020
Interacting Generalized Cosmic Chaplygin gas in Loop quantum cosmology: A singularity free universe
R Chowdhury, P Rudra
International Journal of Theoretical Physics 52, 489-503, 2013
82013
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Articles 1–20