Cedric Notredame

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Paolo Di TommasoSeqeraVerified email at seqera.io
des higginsUniversity College DublinVerified email at ucd.ie
Giovanni BussottiVeracyteVerified email at veracyte.com
Evan FlodenSeqera LabsVerified email at seqera.io
Ionas ErbCentre for Genomic Regulation (CRG), BarcelonaVerified email at crg.eu
Jia-Ming Chang 張家銘Department of Computer Science, National Chengchi UniversityVerified email at nccu.edu.tw
Jean-François TalyCRG - Centre for Genomic regulation - BarcelonaVerified email at crg.es
Moretti SebastienSIB Swiss Institute of BioinformaticsVerified email at unil.ch
Jaap HeringaProfessor of Bioinformatics, Vrije Universiteit AmsterdamVerified email at vu.nl
Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Philipp BucherGroup leader in Bioinformatics, EPFL and Swiss Institute of Bioinformatics, LausanneVerified email at epfl.ch
armougom fabriceVerified email at univ-amu.fr
Jose Espinosa-CarrascoPostdoctoral researcher, Center for Genomic Regulation (CRG)Verified email at crg.eu
Orla O'SullivanTeagasc Food Research CentreVerified email at teagasc.ie
Eric WidmerProfessor of Sociology, University of GenevaVerified email at unige.ch
Jacques-Antoine GauthierSenior lecturer, University of LausanneVerified email at unil.ch
Ioannis XenariosUNIL/CHUV/Health2030 Genome CenterVerified email at unil.ch
Vlasov PKInstitute of Science and Technology Austria (IST Austria)Verified email at ist.ac.at
Michael S. Breen, PhDDepts. Genetics and Genomic Sciences, Psychiatry, Icahn School of Medicine at Mount SinaiVerified email at mssm.edu
Iain WallaceCelgeneVerified email at celgene.com

Cedric Notredame

Centre for Genomic Regulation, Spain

Verified email at crg.eu - Homepage

Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012	17046	2012
T-Coffee: A novel method for fast and accurate multiple sequence alignment C Notredame, DG Higgins, J Heringa Journal of molecular biology 302 (1), 205-217, 2000	8765	2000
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ... Genome research 22 (9), 1775-1789, 2012	5429	2012
Nextflow enables reproducible computational workflows P Di Tommaso, M Chatzou, EW Floden, PP Barja, E Palumbo, ... Nature biotechnology 35 (4), 316-319, 2017	2720	2017
Long noncoding RNAs with enhancer-like function in human cells UA Ørom, T Derrien, M Beringer, K Gumireddy, A Gardini, G Bussotti, ... Cell 143 (1), 46-58, 2010	1983	2010
A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014	1960	2014
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension P Di Tommaso, S Moretti, I Xenarios, M Orobitg, A Montanyola, JM Chang, ... Nucleic acids research 39 (suppl_2), W13-W17, 2011	1249	2011
SAGA: sequence alignment by genetic algorithm C Notredame, DG Higgins Nucleic acids research 24 (8), 1515-1524, 1996	774	1996
M-Coffee: combining multiple sequence alignment methods with T-Coffee IM Wallace, O O'sullivan, DG Higgins, C Notredame Nucleic acids research 34 (6), 1692-1699, 2006	671	2006
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee F Armougom, S Moretti, O Poirot, S Audic, P Dumas, B Schaeli, V Keduas, ... Nucleic acids research 34 (suppl_2), W604-W608, 2006	594	2006
Recent progress in multiple sequence alignment: a survey C Notredame Pharmacogenomics 3 (1), 131-144, 2002	535	2002
Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, L Ann Blomberg, ... PLoS biology 8 (9), e1000475, 2010	474	2010
Epistasis as the primary factor in molecular evolution MS Breen, C Kemena, PK Vlasov, C Notredame, FA Kondrashov Nature 490 (7421), 535-538, 2012	440	2012
Bioinformatics for dummies JM Claverie, C Notredame John Wiley & Sons, 2011	431	2011
3DCoffee: combining protein sequences and structures within multiple sequence alignments O O'Sullivan, K Suhre, C Abergel, DG Higgins, C Notredame Journal of molecular biology 340 (2), 385-395, 2004	426	2004
Tcoffee@ igs: a web server for computing, evaluating and combining multiple sequence alignments O Poirot, E O'Toole, C Notredame Nucleic acids research 31 (13), 3503-3506, 2003	355	2003
COFFEE: an objective function for multiple sequence alignments. C Notredame, L Holm, DG Higgins Bioinformatics (Oxford, England) 14 (5), 407-422, 1998	346	1998
Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project FAANG Consortium, L Andersson, AL Archibald, CD Bottema, R Brauning, ... Genome biology 16, 1-6, 2015	335	2015
Multichannel sequence analysis applied to social science data JA Gauthier, ED Widmer, P Bucher, C Notredame Sociological methodology 40 (1), 1-38, 2010	321	2010
Recent evolutions of multiple sequence alignment algorithms C Notredame PLoS computational biology 3 (8), e123, 2007	314	2007

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