| A Systematic Evaluation of Single-cell RNA-sequencing Imputation Methods W Hou, Z Ji, H Ji, SC Hicks Genome Biology 21 (1), 1, 2020 | 186 | 2020 |
| Transcriptional programs of neoantigen-specific TIL in anti-PD-1-treated lung cancers JX Caushi, J Zhang, Z Ji, A Vaghasia, B Zhang, EHC Hsiue, BJ Mog, ... Nature 596 (7870), 126-132, 2021 | 168 | 2021 |
| Association of cord plasma biomarkers of in utero acetaminophen exposure with risk of attention-deficit/hyperactivity disorder and autism spectrum disorder in childhood Y Ji, RE Azuine, Y Zhang, W Hou, X Hong, G Wang, A Riley, C Pearson, ... JAMA psychiatry 77 (2), 180-189, 2020 | 84 | 2020 |
| Single-cell ATAC-seq signal extraction and enhancement with SCATE Z Ji, W Zhou, W Hou, H Ji Genome biology 21 (1), 1-36, 2020 | 26 | 2020 |
| DNA methylation mediates the effect of maternal smoking on offspring birthweight: a birth cohort study of multi-ethnic US mother–newborn pairs R Xu, X Hong, B Zhang, W Huang, W Hou, G Wang, X Wang, T Igusa, ... Clinical Epigenetics 13, 1-13, 2021 | 21 | 2021 |
| Hadamard Kernel SVM with applications for breast cancer outcome predictions H Jiang, WK Ching, WS Cheung, W Hou, H Yin BMC systems biology 11, 163-174, 2017 | 13 | 2017 |
| A systematic framework to derive N-glycan biosynthesis process and the automated construction of glycosylation networks W Hou, Y Qiu, N Hashimoto, WK Ching, KF Aoki-Kinoshita BMC bioinformatics 17 (7), 465-472, 2016 | 12 | 2016 |
| Finding and analyzing the minimum set of driver nodes in control of boolean networks W Hou, T Tamura, WK Ching, T Akutsu Advances in Complex Systems 19 (03), 1650006, 2016 | 10 | 2016 |
| Drug side-effect profiles prediction: From empirical to structural risk minimization H Jiang, Y Qiu, W Hou, X Cheng, MY Yim, WK Ching IEEE/ACM transactions on computational biology and bioinformatics 17 (2 …, 2018 | 9 | 2018 |
| Integer programming‐based method for observability of singleton attractors in Boolean networks X Cheng, Y Qiu, W Hou, WK Ching IET Systems Biology 11 (1), 30-35, 2017 | 9 | 2017 |
| A statistical framework for differential pseudotime analysis with multiple single-cell RNA-seq samples W Hou, Z Ji, Z Chen, EJ Wherry, SC Hicks, H Ji bioRxiv 1 (July 12, 2021), 1, 2021 | 8* | 2021 |
| On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors W Hou, P Ruan, WK Ching, T Akutsu Journal of theoretical biology 463, 1-11, 2019 | 6 | 2019 |
| Unbiased visualization of single-cell genomic data with SCUBI W Hou, Z Ji Cell reports methods 2 (1), 100135, 2022 | 5 | 2022 |
| On orthogonal feature extraction model with applications in medical prognosis H Jiang, WK Ching, W Hou Applied Mathematical Modelling 40 (19-20), 8766-8776, 2016 | 4 | 2016 |
| On classification of biological data using outlier detection Y Qiu, X Cheng, W Hou, WK Ching IET Digital Library, 2015 | 4 | 2015 |
| A semi-tensor product approach for Probabilistic Boolean Networks X Cheng, Y Qiu, W Hou, WK Ching 2014 8th International Conference on Systems Biology (ISB), 85-90, 2014 | 4 | 2014 |
| In-utero co-exposure to toxic metals and micronutrients on childhood risk of overweight or obesity: new insight on micronutrients counteracting toxic metals W Huang, T Igusa, G Wang, JP Buckley, X Hong, E Bind, A Steffens, ... International Journal of Obesity 46 (8), 1435-1445, 2022 | 3 | 2022 |
| Reference-free and cost-effective automated cell type annotation with GPT-4 in single-cell RNA-seq analysis W Hou, Z Ji bioRxiv, 2023.04. 16.537094, 2023 | 2 | 2023 |
| GeneTuring tests GPT models in genomics W Hou, Z Ji bioRxiv, 2023.03. 11.532238, 2023 | 1 | 2023 |
| A multiple linear regression model for structure of n-linked oligosaccharides X Cheng, WK Ching, W Hou, KF Aoki-Kinoshita IET Digital Library, 2015 | 1 | 2015 |
Zhicheng Ji, PhDAssistant Professor of Biostatistics and Bioinformatics, Duke University School of MedicineVerified email at duke.edu
