| Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications F Krueger, SR Andrews bioinformatics 27 (11), 1571-1572, 2011 | 4696 | 2011 |
| Trim galore F Krueger A wrapper tool around Cutadapt and FastQC to consistently apply quality and …, 2015 | 2087* | 2015 |
| FastQC S Andrews, F Krueger, A Segonds-Pichon, L Biggins, C Krueger, ... A quality control tool for high throughput sequence data 370, 2010 | 1458 | 2010 |
| Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation G Ficz, MR Branco, S Seisenberger, F Santos, F Krueger, TA Hore, ... Nature 473 (7347), 398-402, 2011 | 1399 | 2011 |
| Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity SA Smallwood, HJ Lee, C Angermueller, F Krueger, H Saadeh, J Peat, ... Nature methods 11 (8), 817-820, 2014 | 1186 | 2014 |
| Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution MJ Booth, MR Branco, G Ficz, D Oxley, F Krueger, W Reik, ... Science 336 (6083), 934-937, 2012 | 1074 | 2012 |
| The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells S Seisenberger, S Andrews, F Krueger, J Arand, J Walter, F Santos, ... Molecular cell 48 (6), 849-862, 2012 | 1058 | 2012 |
| Resetting transcription factor control circuitry toward ground-state pluripotency in human Y Takashima, G Guo, R Loos, J Nichols, G Ficz, F Krueger, D Oxley, ... Cell 158 (6), 1254-1269, 2014 | 1028 | 2014 |
| Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity C Angermueller, SJ Clark, HJ Lee, IC Macaulay, MJ Teng, TX Hu, ... Nature methods 13 (3), 229-232, 2016 | 756 | 2016 |
| Dynamic CpG island methylation landscape in oocytes and preimplantation embryos SA Smallwood, S Tomizawa, F Krueger, N Ruf, N Carli, ... Nature genetics 43 (8), 811-814, 2011 | 740 | 2011 |
| scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells SJ Clark, R Argelaguet, CA Kapourani, TM Stubbs, HJ Lee, ... Nature communications 9 (1), 781, 2018 | 634 | 2018 |
| FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency G Ficz, TA Hore, F Santos, HJ Lee, W Dean, J Arand, F Krueger, D Oxley, ... Cell stem cell 13 (3), 351-359, 2013 | 449 | 2013 |
| DNA methylome analysis using short bisulfite sequencing data F Krueger, B Kreck, A Franke, SR Andrews Nature methods 9 (2), 145-151, 2012 | 421 | 2012 |
| Multi-omics profiling of mouse gastrulation at single-cell resolution R Argelaguet, SJ Clark, H Mohammed, LC Stapel, C Krueger, ... Nature 576 (7787), 487-491, 2019 | 409 | 2019 |
| Multi-tissue DNA methylation age predictor in mouse TM Stubbs, MJ Bonder, AK Stark, F Krueger, F von Meyenn, O Stegle, ... Genome biology 18, 1-14, 2017 | 378 | 2017 |
| Efficient targeted DNA methylation with chimeric dCas9–Dnmt3a–Dnmt3L methyltransferase P Stepper, G Kungulovski, RZ Jurkowska, T Chandra, F Krueger, ... Nucleic acids research 45 (4), 1703-1713, 2017 | 328 | 2017 |
| Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data N Olova, F Krueger, S Andrews, D Oxley, RV Berrens, MR Branco, W Reik Genome biology 19, 1-19, 2018 | 311 | 2018 |
| Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq) SJ Clark, SA Smallwood, HJ Lee, F Krueger, W Reik, G Kelsey Nature protocols 12 (3), 534-547, 2017 | 250 | 2017 |
| Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism O Hahn, S Grönke, TM Stubbs, G Ficz, O Hendrich, F Krueger, S Andrews, ... Genome biology 18, 1-18, 2017 | 224 | 2017 |
| Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies S Patalano, A Vlasova, C Wyatt, P Ewels, F Camara, PG Ferreira, ... Proceedings of the National Academy of Sciences 112 (45), 13970-13975, 2015 | 219 | 2015 |
