| CSAR Dataset Release 2012: Ligands, affinities, complexes, and docking decoys. JB Dunbar, RD Smith, KL Damm-Ganamet, A Ahmed, EX Esposito, ... Journal of chemical information and modeling, DOI: 10.1021/ci4000486, 2013 | 121 | 2013 |
| Multiscale modeling of macromolecular conformational changes combining concepts from rigidity and elastic network theory A Ahmed, H Gohlke Proteins: Structure, Function, and Bioinformatics 63 (4), 1038-1051, 2006 | 109 | 2006 |
| Recent improvements to Binding MOAD: a resource for protein–ligand binding affinities and structures A Ahmed, RD Smith, JJ Clark, JB Dunbar Jr, HA Carlson Nucleic acids research 43 (D1), D465-D469, 2015 | 108 | 2015 |
| CSAR 2014: a benchmark exercise using unpublished data from pharma HA Carlson, RD Smith, KL Damm-Ganamet, JA Stuckey, A Ahmed, ... Journal of chemical information and modeling 56 (6), 1063-1077, 2016 | 107 | 2016 |
| Excited states of ribosome translocation revealed through integrative molecular modeling PC Whitford, A Ahmed, Y Yu, SP Hennelly, F Tama, CMT Spahn, ... Proceedings of the National Academy of Sciences 108 (47), 18943-18948, 2011 | 99 | 2011 |
| NMSim web server: integrated approach for normal mode-based geometric simulations of biologically relevant conformational transitions in proteins DM Krüger, A Ahmed, H Gohlke Nucleic acids research 40 (W1), W310-W316, 2012 | 93 | 2012 |
| A normal mode-based geometric simulation approach for exploring biologically relevant conformational transitions in proteins A Ahmed, F Rippmann, G Barnickel, H Gohlke Journal of Chemical Information and Modeling 51 (7), 1604-1622, 2011 | 73 | 2011 |
| Molecular model of a soluble guanylyl cyclase fragment determined by small-angle X-ray scattering and chemical cross-linking BG Fritz, SA Roberts, A Ahmed, L Breci, W Li, A Weichsel, JL Brailey, ... Biochemistry 52 (9), 1568-1582, 2013 | 69 | 2013 |
| Updates to binding MOAD (mother of all databases): polypharmacology tools and their utility in drug repurposing RD Smith, JJ Clark, A Ahmed, ZJ Orban, JB Dunbar Jr, HA Carlson Journal of molecular biology 431 (13), 2423-2433, 2019 | 65 | 2019 |
| CSAR benchmark exercise 2013: evaluation of results from a combined computational protein design, docking, and scoring/ranking challenge RD Smith, KL Damm-Ganamet, JB Dunbar Jr, A Ahmed, K Chinnaswamy, ... Journal of chemical information and modeling 56 (6), 1022-1031, 2016 | 58 | 2016 |
| Large‐scale comparison of protein essential dynamics from molecular dynamics simulations and coarse‐grained normal mode analyses A Ahmed, S Villinger, H Gohlke Proteins: Structure, Function, and Bioinformatics 78 (16), 3341-3352, 2010 | 52 | 2010 |
| Protein flexibility and mobility in structure-based drug design A Ahmed, S Kazemi, H Gohlke Frontiers in Drug Design & Discovery 3 (1), 455-476, 2007 | 47 | 2007 |
| Consensus among flexible fitting approaches improves the interpretation of cryo-EM data A Ahmed, PC Whitford, KY Sanbonmatsu, F Tama Journal of structural biology 177 (2), 561-570, 2012 | 40 | 2012 |
| Consensus among multiple approaches as a reliability measure for flexible fitting into cryo-EM data A Ahmed, F Tama Journal of structural biology 182, 67-77, 2013 | 25 | 2013 |
| Egg enumeration, incubation, hatching and development of the “Miracle Fish” Oreochromis niloticus, in the Sudan AA Ahmed, MS Abdallaa, TT George AAC Special Publication 12, 60-64, 2007 | 17 | 2007 |
| Multiscale modeling of macromolecular conformational changes A Ahmed, H Gohlke Chemistry central journal 3 (1), P53, 2009 | 10 | 2009 |
| Final report of the project of assessment of Jebel Aulia reservoir fisheries AA Ahmed Fisheries Research Cooperation. Khartoum, 1985 | 7 | 1985 |
| Evaluation of Some Man-Made Forests at Al-Jabal Al-Akhdar in Libya O Mohamed, EK Ibrahim, M Ahmed, A Hosney, AA Ahmed Alexandria Journal of Agricultural Sciences 64 (3), 173-194, 2019 | 1 | 2019 |
| EFFICIENCY OF CERTAIN PLANT EXTRACTS AGAINST CERATITIS CAPITA TA (WIED.) AND BACTROCERA ZONATA (SAUNDERS)(DIPTERA: TEPHRITIDAE) AH HANAFY, AA AHMED, AMZ MOSALLAM, AHM IBRAHIM Egyptian Journal of Agricultural Research 86 (3), 861-870, 2008 | 1 | 2008 |
| Study of Conformational Polymorphism of Flexible Sulfonamides and Sulfoesters having Alternating Electron Rich and Electron Deficient Aromatics RL Gawade, DK Chakravarty, A Kotmale, E Sangtani, PV Joshi, A Ahmed, ... Dedicated to my Beloved Family....., 165, 2016 | | 2016 |
