| A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis MA Dillies, A Rau, J Aubert, C Hennequet-Antier, M Jeanmougin, ... Briefings in bioinformatics 14 (6), 671-683, 2013 | 1647 | 2013 |
| SARTools: a DESeq2-and EdgeR-based R pipeline for comprehensive differential analysis of RNA-Seq data H Varet, L Brillet-Guéguen, JY Coppée, MA Dillies PloS one 11 (6), e0157022, 2016 | 823 | 2016 |
| Nonpathogenic SIV infection of African green monkeys induces a strong but rapidly controlled type I IFN response B Jacquelin, V Mayau, B Targat, AS Liovat, D Kunkel, G Petitjean, ... The Journal of clinical investigation 119 (12), 3544-3555, 2009 | 526 | 2009 |
| Autoantibodies neutralizing type I IFNs are present in~ 4% of uninfected individuals over 70 years old and account for~ 20% of COVID-19 deaths P Bastard, A Gervais, T Le Voyer, J Rosain, Q Philippot, J Manry, ... Science immunology 6 (62), eabl4340, 2021 | 429 | 2021 |
| Anti-inflammatory effect of Lactobacillus casei on Shigella-infected human intestinal epithelial cells MT Tien, SE Girardin, B Regnault, L Le Bourhis, MA Dillies, JY Coppée, ... The Journal of Immunology 176 (2), 1228-1237, 2006 | 415 | 2006 |
| Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila H Brüggemann, A Hagman, M Jules, O Sismeiro, MA Dillies, C Gouyette, ... Cellular microbiology 8 (8), 1228-1240, 2006 | 312 | 2006 |
| Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses L Jourdren, M Bernard, MA Dillies, S Le Crom Bioinformatics 28 (11), 1542-1543, 2012 | 172 | 2012 |
| Bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection JJ Quereda, O Dussurget, MA Nahori, A Ghozlane, S Volant, MA Dillies, ... Proceedings of the National Academy of Sciences 113 (20), 5706-5711, 2016 | 168 | 2016 |
| Identification and characterization of the genetic changes responsible for the characteristic smooth‐to‐rough morphotype alterations of clinically persistent M ycobacterium … A Pawlik, G Garnier, M Orgeur, P Tong, A Lohan, F Le Chevalier, ... Molecular microbiology 90 (3), 612-629, 2013 | 161 | 2013 |
| Bacteriophages to reduce gut carriage of antibiotic resistant uropathogens with low impact on microbiota composition M Galtier, L De Sordi, D Maura, H Arachchi, S Volant, MA Dillies, ... Environmental microbiology 18 (7), 2237-2245, 2016 | 155 | 2016 |
| The risk of COVID-19 death is much greater and age dependent with type I IFN autoantibodies J Manry, P Bastard, A Gervais, T Le Voyer, J Rosain, Q Philippot, ... Proceedings of the National Academy of Sciences 119 (21), 2022 | 127 | 2022 |
| Docosahexaenoic acid inhibits Helicobacter pylori growth in vitro and mice gastric mucosa colonization M Correia, V Michel, AA Matos, P Carvalho, MJ Oliveira, RM Ferreira, ... PloS one 7 (4), e35072, 2012 | 109 | 2012 |
| Massive activation of archaeal defense genes during viral infection TEF Quax, M Voet, O Sismeiro, MA Dillies, B Jagla, JY Coppée, ... Journal of virology 87 (15), 8419-8428, 2013 | 104 | 2013 |
| The Global Regulator CodY Regulates Toxin Gene Expression in Bacillus anthracis and Is Required for Full Virulence W van Schaik, A Château, MA Dillies, JY Coppée, AL Sonenshein, ... Infection and immunity 77 (10), 4437-4445, 2009 | 102 | 2009 |
| Comparative analysis of viral RNA signatures on different RIG-I-like receptors RY Sanchez David, C Combredet, O Sismeiro, MA Dillies, B Jagla, ... Elife 5, e11275, 2016 | 100 | 2016 |
| Identification of the Virulence Landscape Essential for Entamoeba histolytica Invasion of the Human Colon R Thibeaux, C Weber, CC Hon, MA Dillies, P Avé, JY Coppée, ... PLoS Pathogens 9 (12), e1003824, 2013 | 92 | 2013 |
| Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans S Koechler, J Cleiss-Arnold, C Proux, O Sismeiro, MA Dillies, ... BMC microbiology 10, 1-13, 2010 | 88 | 2010 |
| Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate O Natalang, E Bischoff, G Deplaine, C Proux, MA Dillies, O Sismeiro, ... BMC genomics 9, 1-17, 2008 | 88 | 2008 |
| Transcriptome analysis of Yersinia pestis in human plasma: an approach for discovering bacterial genes involved in septicaemic plague S Chauvaux, ML Rosso, L Frangeul, C Lacroix, L Labarre, A Schiavo, ... Microbiology 153 (9), 3112-3124, 2007 | 88 | 2007 |
| Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica CC Hon, C Weber, O Sismeiro, C Proux, M Koutero, M Deloger, S Das, ... Nucleic acids research 41 (3), 1936-1952, 2013 | 85 | 2013 |
